Gene detail

Detail information of MD06G1235400 Annotation

Gene ID	Annotation
MD06G1235400	DNA polymerase epsilon subunit B2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0691	Unknown Function Kinase DNA polymerase epsilon subunit 2 [EC:2.7.7.7] wee1-like protein kinase [EC:2.7.11.1] epsilon DNA polymerase complex nuclear origin of replication recognition complex DNA-dependent DNA replication DNA replication initiation replication fork protection DNA replication checkpoint

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1235400	mRNA	Chr06	36645180	36648568	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G22110.1	1	ATDPB2;CYL2;DPB2\|DNA polymerase epsilon subunit B2;CYCLOPS 2
Prunus persica	Prupe.8G055400.2.p	1	DNA polymerase epsilon subunit B2
Prunus persica	Prupe.8G055400.6.p	1	DNA polymerase epsilon subunit B2
Prunus persica	Prupe.8G055400.5.p	1	DNA polymerase epsilon subunit B2
Prunus persica	Prupe.8G055400.3.p	1	DNA polymerase epsilon subunit B2
Prunus persica	Prupe.8G055400.4.p	1	DNA polymerase epsilon subunit B2
Prunus persica	Prupe.8G055400.1.p	1	DNA polymerase epsilon subunit B2
Pyrus communis	PCP027918.1	1	-
Pyrus x bretschneideri	Pbr028318.1	1	-
Rubus occidentalis	Ro05_G30491	1	-
Fragaria vesca	mrna09309.1	1	DNA polymerase epsilon subunit B2
Vitis vinifera	GSVIVT01008158001	1	DNA polymerase epsilon subunit B2
Solanum lycopersicum	Solyc03g098250.2.1	1	DNA polymerase epsilon subunit B2
Populus trichocarpa	Potri.012G039300.1	1	DNA polymerase epsilon subunit B2
Nicotiana benthamiana	Niben101Scf08137g03002.1	1	DNA polymerase epsilon subunit B2 LENGTH=526
Oryza sativa	LOC_Os05g06840.1	1	"POLE2A - Putative DNA polymerase epsilon complex subunit,expressed"
Oryza sativa	LOC_Os08g36330.1	1	"POLE2B - Putative DNA polymerase epsilon complex subunit,expressed"
Zea mays	GRMZM2G154267_P01	1	DNA polymerase epsilon subunit 2

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003887	DNA-directed DNA polymerase activity	molecular_function
GO:0006261	DNA-dependent DNA replication	biological_process

KEGG

KO	Description	Enzyme
K02325	DNA polymerase epsilon subunit 2	EC:2.7.7.7

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.70228
SRR5252888	dormant buds	no	dormant buds(0 month)	0.274641
SRR5252889	dormant buds	no	dormant buds(0 month)	0.477235
SRR5252886	dormant buds	no	dormant buds(1 months)	0.348877
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0617979
SRR5252884	dormant buds	no	dormant buds(2 months)	0.296074
SRR5252882	dormant buds	no	dormant buds(3 months)	0.692874
SRR5252883	dormant buds	no	dormant buds(3 months)	0.161787
SRR5252880	dormant buds	no	dormant buds(4 months)	2.37083
SRR5252881	dormant buds	no	dormant buds(4 months)	2.52188
SRR5252878	bud break	no	bud break	6.88748
SRR5252879	bud break	no	bud break	6.00086
SRR3744766	flower	no	mature	0.165268
SRR3744767	flower	no	mature	0.126482
SRR3744768	flower	no	mature	0.126976
SRR6308190	stigmas	no	open flowers	0.236262
SRR6308181	styles	no	open flowers	0.0677509
SRR6308188	filaments	no	open flowers	0.406778
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	1.79009
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.739216
SRR6308189	ovaries	no	open flowers	0.655439
SRR3384922	fruit	no	1 week after full bloom	2.31658
SRR3384921	fruit	no	2 week after full bloom	1.70514
SRR3384920	fruit	no	3 week after full bloom	0.971495
SRR3384919	fruit	no	4 week after full bloom	1.42787
SRR3384923	fruit	no	5 week after full bloom	0.50436
SRR3384918	fruit	no	6 week after full bloom	0.604645
SRR3384917	fruit	no	8 week after full bloom	0.0623537
SRR3384916	fruit	no	10 week after full bloom	0.121504
SRR3384915	fruit	no	12 week after full bloom	0.239604
SRR3384914	fruit	no	14 week after full bloom	0.0929525
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.67384
SRR768129	whole fruit	no	35 days post anthesis	3.18609
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.309292
SRR7343308	immature fruit flesh	no	immature	0.27366
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.138391
SRR1613974	Central seeds	no	20DAPF	0.199663
SRR1613975	Central seeds	no	20DAPF	0.322707
SRR1613976	Lateral seeds	no	20DAPF	0.325868
SRR1613977	Lateral seeds	no	20DAPF	0.13392
SRR1613978	Lateral seeds	no	20DAPF	0.205021
SRR3744786	stem	no	mature	0.127525
SRR3744787	stem	no	mature	0.252295
SRR3744772	stem	no	mature	0.188726
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.12568
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.21955
SRR1089478	leaf	Virus-free	plantlets	0.534836
SRR1089477	leaf	ASGV-infected	plantlets	0.691444
SRR767660	leaf	uninfected	fully developed	0.271288
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.916568
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.345887
SRR6308182	young leaf	no	immature leaves	10.329
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.068556
SRR3744771	leaf	no	mature	0.0224972
SRR5405145	leaf	no	mature	0.317222
SRR6320561	leaf	no	mature	0.467587