Detail information of MD06G1239200 Annotation
Gene IDAnnotation
MD06G1239200RING/U-box superfamily protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0049mitochondrial inner membrane
mitochondrial respiratory chain complex III
tricarboxylic acid cycle
intracellular signal transduction
mitochondrial transport
Golgi apparatus
protein targeting to vacuole
response to chitin

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD06G1239200mRNAChr063696850036972674+

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
Ubiquitin FamilyRING

Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT3G19950.11RING/U-box superfamily protein
Prunus persicaPrupe.5G243100.2.p1RING/U-box superfamily protein
Prunus persicaPrupe.5G243100.3.p1RING/U-box superfamily protein
Prunus persicaPrupe.5G243100.1.p1RING/U-box superfamily protein
Pyrus communisPCP008774.11-
Pyrus x bretschneideriPbr028287.11-
Rosa multifloraRmu_sc0005310.1_g000014.11-
Rubus occidentalisRo05_G036901-
Fragaria vescamrna09176.11RING/U-box superfamily protein
Solanum lycopersicumSolyc03g098590.2.11RING/U-box superfamily protein
Solanum lycopersicumSolyc04g011610.1.11zinc finger (C3HC4-type RING finger) family protein
Populus trichocarpaPotri.012G036700.11RING/U-box superfamily protein
Populus trichocarpaPotri.015G028400.10.654RING/U-box superfamily protein
Nicotiana benthamianaNiben101Scf07440g02026.11RING finger protein 150
Nicotiana benthamianaNiben101Scf03221g01011.10.871RING finger protein 150
Oryza sativaLOC_Os06g01200.11"zinc finger, C3HC4 type domain containing protein, expressed"
Oryza sativaLOC_Os10g34590.11"zinc finger, C3HC4 type domain containing protein, expressed"
Oryza sativaLOC_Os08g36170.11"cytokinesis negative regulator RCP1, putative, expressed"
Zea maysGRMZM2G022175_P011-
Zea maysGRMZM2G157855_P010.722RHC1A

Gene Ontology
GO termDescriptionCategory
GO:0008270zinc ion bindingmolecular_function
GO:0005515protein bindingmolecular_function

KEGG
KODescriptionEnzyme
K11982E3 ubiquitin-protein ligase RNF115/126EC:2.3.2.27

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF14369.2zinc_ribbon_918521.10E-14
PF13639.2zf-RING_22212634.50E-13


Expression pattern
TOP