Gene detail

Detail information of MD07G1003300 Annotation

Gene ID	Annotation
MD07G1003300	HIT-type Zinc finger family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1003300	mRNA	Chr07	326777	330103	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G04945.2	1	HIT-type Zinc finger family protein
Arabidopsis thaliana	AT1G04945.3	1	HIT-type Zinc finger family protein
Arabidopsis thaliana	AT1G04945.1	0.824	HIT-type Zinc finger family protein
Prunus persica	Prupe.2G005000.6.p	1	HIT-type Zinc finger family protein
Prunus persica	Prupe.2G005000.1.p	0.943	HIT-type Zinc finger family protein
Pyrus communis	PCP041184.1	1	-
Pyrus x bretschneideri	Pbr023781.1	1	-
Rosa multiflora	Rmu_sc0007103.1_g000018.1	1	-
Rosa multiflora	Rmu_sc0002541.1_g000034.1	0.822	-
Rubus occidentalis	Ro07_G15420	1	-
Fragaria vesca	mrna25087.1	1	HIT-type Zinc finger family protein
Vitis vinifera	GSVIVT01001402001	1	HIT-type Zinc finger family protein
Populus trichocarpa	Potri.001G228000.1	1	HIT-type Zinc finger family protein
Nicotiana benthamiana	Niben101Scf13683g00001.1	1	HIT-type Zinc finger family protein LENGTH=644
Nicotiana benthamiana	Niben101Scf02123g04002.1	0.824	HIT-type Zinc finger family protein LENGTH=644
Oryza sativa	LOC_Os01g73150.1	1	expressed protein
Zea mays	GRMZM2G171478_P01	1	Putative

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04438.12	zf-HIT	16	44	1.80E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.09293
SRR5252888	dormant buds	no	dormant buds(0 month)	6.79191
SRR5252889	dormant buds	no	dormant buds(0 month)	5.72709
SRR5252886	dormant buds	no	dormant buds(1 months)	5.75185
SRR5252887	dormant buds	no	dormant buds(1 months)	5.55168
SRR5252884	dormant buds	no	dormant buds(2 months)	6.97328
SRR5252882	dormant buds	no	dormant buds(3 months)	6.49427
SRR5252883	dormant buds	no	dormant buds(3 months)	6.96774
SRR5252880	dormant buds	no	dormant buds(4 months)	7.37874
SRR5252881	dormant buds	no	dormant buds(4 months)	7.80273
SRR5252878	bud break	no	bud break	8.14398
SRR5252879	bud break	no	bud break	9.19599
SRR3744766	flower	no	mature	3.29527
SRR3744767	flower	no	mature	3.19242
SRR3744768	flower	no	mature	3.55316
SRR6308190	stigmas	no	open flowers	1.66913
SRR6308181	styles	no	open flowers	2.18802
SRR6308188	filaments	no	open flowers	4.10547
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.48306
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	6.58118
SRR6308194	sepals	no	open flowers	3.74178
SRR6308193	receptacles	no	open flowers	4.27279
SRR6308189	ovaries	no	open flowers	3.41767
SRR3384922	fruit	no	1 week after full bloom	4.91052
SRR3384921	fruit	no	2 week after full bloom	4.20165
SRR3384920	fruit	no	3 week after full bloom	3.16474
SRR3384919	fruit	no	4 week after full bloom	4.32386
SRR3384923	fruit	no	5 week after full bloom	2.70214
SRR3384918	fruit	no	6 week after full bloom	1.91817
SRR3384917	fruit	no	8 week after full bloom	2.01407
SRR3384916	fruit	no	10 week after full bloom	1.63527
SRR3384915	fruit	no	12 week after full bloom	2.56366
SRR3384914	fruit	no	14 week after full bloom	2.58021
SRR3384913	fruit	no	16 week after full bloom	2.32074
SRR3384912	fruit	no	18 week after full bloom	2.64458
SRR3384911	fruit	no	19 week after full bloom	1.88991
SRR3384910	fruit	no	20 week after full bloom	2.60903
SRR768128	whole fruit	no	25 days post anthesis	4.16746
SRR768129	whole fruit	no	35 days post anthesis	3.46329
SRR768130	whole fruit	no	60 days post anthesis	3.4217
SRR768131	whole fruit	no	87 days post anthesis	2.57555
SRR7343308	immature fruit flesh	no	immature	4.696
SRR7343309	immature fruit flesh	no	immature	4.13416
SRR6320494	ripe fruit flesh	no	mature	2.38109
SRR5405143	ripe fruit peel	no	mature	3.85243
SRR6320572	ripe fruit peel	no	mature	3.21634
SRR7403504	fruit	uninfected	mature	2.96127
SRR7403506	fruit	uninfected	mature	2.49703
SRR7403507	fruit	uninfected	mature	2.639
SRR7403500	fruit	infected with penicillium expansum	mature	4.36387
SRR7403501	fruit	infected with penicillium expansum	mature	4.58293
SRR7403508	fruit	infected with penicillium expansum	mature	5.09934
SRR7403502	fruit	infected with penicillium expansum	mature	6.27473
SRR7403503	fruit	infected with penicillium expansum	mature	5.33381
SRR7403505	fruit	infected with penicillium expansum	mature	5.24045
SRR1613973	Central seeds	no	20DAPF	7.01205
SRR1613974	Central seeds	no	20DAPF	7.45648
SRR1613975	Central seeds	no	20DAPF	6.56649
SRR1613976	Lateral seeds	no	20DAPF	7.83215
SRR1613977	Lateral seeds	no	20DAPF	6.06676
SRR1613978	Lateral seeds	no	20DAPF	6.18369
SRR3744786	stem	no	mature	5.36437
SRR3744787	stem	no	mature	6.00694
SRR3744772	stem	no	mature	5.61017
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.655
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.98567
SRR1089478	leaf	Virus-free	plantlets	1.2596
SRR1089477	leaf	ASGV-infected	plantlets	1.74474
SRR767660	leaf	uninfected	fully developed	2.19054
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.5136
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.18934
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.17902
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.06943
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.28395
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.49113
SRR6308182	young leaf	no	immature leaves	4.55711
SRR3744769	leaf	no	mature	4.40964
SRR3744770	leaf	no	mature	4.15287
SRR3744771	leaf	no	mature	4.4519
SRR5405145	leaf	no	mature	2.40146
SRR6320561	leaf	no	mature	3.30349