Gene detail

Detail information of MD07G1005200 Annotation

Gene ID	Annotation
MD07G1005200	RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0987	chloroplast envelope chloroplast stroma chloroplast thylakoid membrane ribosome protein targeting to chloroplast isopentenyl diphosphate biosynthetic process structural constituent of ribosome peroxiredoxin Q/BCP [EC:1.11.1.15] chloroplast stromal thylakoid peroxiredoxin activity RPS31; 30S ribosomal protein S31 large subunit ribosomal protein L11 chlorophyll biosynthetic process plastid translation rRNA processing

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1005200	mRNA	Chr07	542261	544540	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP002318.1	1	-
Pyrus x bretschneideri	Pbr023789.1	1	-
Fragaria vesca	mrna26957.1	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Vitis vinifera	GSVIVT01032039001	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Populus trichocarpa	Potri.009G065900.1	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Nicotiana benthamiana	Niben101Scf05100g01013.1	1	RNA-binding protein 39
Nicotiana benthamiana	Niben101Scf01798g02004.1	1	Polyadenylate-binding protein 1
Oryza sativa	LOC_Os09g10760.1	1	"RNA recognition motif containing protein, putative, expressed"
Zea mays	GRMZM2G143870_P01	1	Plastid-specific 30S ribosomal protein 2

Gene Ontology

GO term	Description	Category
GO:0000166	nucleotide binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function

KEGG

KO	Description	Enzyme
K13126	polyadenylate-binding protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.18	RRM_1	77	147	2.60E-17
PF00076.18	RRM_1	177	239	3.10E-18

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	167.13
SRR5252888	dormant buds	no	dormant buds(0 month)	6.77093
SRR5252889	dormant buds	no	dormant buds(0 month)	7.97449
SRR5252886	dormant buds	no	dormant buds(1 months)	11.7549
SRR5252887	dormant buds	no	dormant buds(1 months)	6.70362
SRR5252884	dormant buds	no	dormant buds(2 months)	15.3286
SRR5252882	dormant buds	no	dormant buds(3 months)	13.9096
SRR5252883	dormant buds	no	dormant buds(3 months)	13.0296
SRR5252880	dormant buds	no	dormant buds(4 months)	18.9962
SRR5252881	dormant buds	no	dormant buds(4 months)	16.8951
SRR5252878	bud break	no	bud break	25.2277
SRR5252879	bud break	no	bud break	35.641
SRR3744766	flower	no	mature	5.28554
SRR3744767	flower	no	mature	5.15653
SRR3744768	flower	no	mature	4.78318
SRR6308190	stigmas	no	open flowers	7.97234
SRR6308181	styles	no	open flowers	9.59823
SRR6308188	filaments	no	open flowers	16.714
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.26054
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	7.94899
SRR6308194	sepals	no	open flowers	23.5266
SRR6308193	receptacles	no	open flowers	11.9654
SRR6308189	ovaries	no	open flowers	14.3041
SRR3384922	fruit	no	1 week after full bloom	27.0784
SRR3384921	fruit	no	2 week after full bloom	23.869
SRR3384920	fruit	no	3 week after full bloom	41.8164
SRR3384919	fruit	no	4 week after full bloom	28.5717
SRR3384923	fruit	no	5 week after full bloom	32.0508
SRR3384918	fruit	no	6 week after full bloom	24.1766
SRR3384917	fruit	no	8 week after full bloom	31.522
SRR3384916	fruit	no	10 week after full bloom	37.3541
SRR3384915	fruit	no	12 week after full bloom	28.8344
SRR3384914	fruit	no	14 week after full bloom	32.5497
SRR3384913	fruit	no	16 week after full bloom	27.2687
SRR3384912	fruit	no	18 week after full bloom	27.3638
SRR3384911	fruit	no	19 week after full bloom	29.7687
SRR3384910	fruit	no	20 week after full bloom	23.4032
SRR768128	whole fruit	no	25 days post anthesis	40.9102
SRR768129	whole fruit	no	35 days post anthesis	28.8484
SRR768130	whole fruit	no	60 days post anthesis	19.9011
SRR768131	whole fruit	no	87 days post anthesis	13.4628
SRR7343308	immature fruit flesh	no	immature	10.1449
SRR7343309	immature fruit flesh	no	immature	11.4897
SRR6320494	ripe fruit flesh	no	mature	21.7254
SRR5405143	ripe fruit peel	no	mature	33.4546
SRR6320572	ripe fruit peel	no	mature	25.1332
SRR7403504	fruit	uninfected	mature	36.724
SRR7403506	fruit	uninfected	mature	37.9255
SRR7403507	fruit	uninfected	mature	35.596
SRR7403500	fruit	infected with penicillium expansum	mature	1.30692
SRR7403501	fruit	infected with penicillium expansum	mature	1.93944
SRR7403508	fruit	infected with penicillium expansum	mature	1.22336
SRR7403502	fruit	infected with penicillium expansum	mature	2.02679
SRR7403503	fruit	infected with penicillium expansum	mature	1.50917
SRR7403505	fruit	infected with penicillium expansum	mature	1.22091
SRR1613973	Central seeds	no	20DAPF	12.3727
SRR1613974	Central seeds	no	20DAPF	12.9363
SRR1613975	Central seeds	no	20DAPF	10.5315
SRR1613976	Lateral seeds	no	20DAPF	9.85064
SRR1613977	Lateral seeds	no	20DAPF	10.526
SRR1613978	Lateral seeds	no	20DAPF	12.6676
SRR3744786	stem	no	mature	4.25472
SRR3744787	stem	no	mature	3.57493
SRR3744772	stem	no	mature	4.25713
SRX765691	seedling shoot apex	no	4-6 week old seedling	27.6709
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	37.2199
SRR1089478	leaf	Virus-free	plantlets	49.8577
SRR1089477	leaf	ASGV-infected	plantlets	45.5983
SRR767660	leaf	uninfected	fully developed	64.8451
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	51.3316
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	103.7
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	25.6537
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	90.4433
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	18.2538
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	28.0948
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	20.8191
SRR6308182	young leaf	no	immature leaves	40.8462
SRR3744769	leaf	no	mature	16.6598
SRR3744770	leaf	no	mature	17.2364
SRR3744771	leaf	no	mature	16.6913
SRR5405145	leaf	no	mature	139.095
SRR6320561	leaf	no	mature	128.887