Gene detail

Detail information of MD07G1005300 Annotation

Gene ID	Annotation
MD07G1005300	Ribosomal protein L6 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1005300	mRNA	Chr07	549299	551810	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP002317.1	1	-
Pyrus x bretschneideri	Pbr023790.1	1	-
Oryza sativa	LOC_Os04g39700.1	1	"60S ribosomal protein L6, putative, expressed"
Oryza sativa	LOC_Os02g37862.1	1	"60S ribosomal protein L6, putative, expressed"
Zea mays	GRMZM2G003384_P01	1	60S ribosomal protein L6

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02934	large subunit ribosomal protein L6e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03868.11	Ribosomal_L6e_N	3	61	1.50E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	154.573
SRR5252888	dormant buds	no	dormant buds(0 month)	127.795
SRR5252889	dormant buds	no	dormant buds(0 month)	104.098
SRR5252886	dormant buds	no	dormant buds(1 months)	114.95
SRR5252887	dormant buds	no	dormant buds(1 months)	95.5402
SRR5252884	dormant buds	no	dormant buds(2 months)	131.383
SRR5252882	dormant buds	no	dormant buds(3 months)	142.262
SRR5252883	dormant buds	no	dormant buds(3 months)	90.5761
SRR5252880	dormant buds	no	dormant buds(4 months)	205.624
SRR5252881	dormant buds	no	dormant buds(4 months)	180.459
SRR5252878	bud break	no	bud break	115.679
SRR5252879	bud break	no	bud break	226.809
SRR3744766	flower	no	mature	64.6628
SRR3744767	flower	no	mature	63.5635
SRR3744768	flower	no	mature	62.7282
SRR6308190	stigmas	no	open flowers	54.1084
SRR6308181	styles	no	open flowers	71.6065
SRR6308188	filaments	no	open flowers	124.52
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	32.0065
SRR6308192	pollen	no	open flowers	13.0842
SRR6308191	petals	no	open flowers	115.373
SRR6308194	sepals	no	open flowers	85.1939
SRR6308193	receptacles	no	open flowers	111.239
SRR6308189	ovaries	no	open flowers	94.7101
SRR3384922	fruit	no	1 week after full bloom	182.561
SRR3384921	fruit	no	2 week after full bloom	169.578
SRR3384920	fruit	no	3 week after full bloom	124.268
SRR3384919	fruit	no	4 week after full bloom	142.608
SRR3384923	fruit	no	5 week after full bloom	103.304
SRR3384918	fruit	no	6 week after full bloom	115.296
SRR3384917	fruit	no	8 week after full bloom	110.399
SRR3384916	fruit	no	10 week after full bloom	118.994
SRR3384915	fruit	no	12 week after full bloom	112.819
SRR3384914	fruit	no	14 week after full bloom	119.784
SRR3384913	fruit	no	16 week after full bloom	121.641
SRR3384912	fruit	no	18 week after full bloom	105.242
SRR3384911	fruit	no	19 week after full bloom	96.0556
SRR3384910	fruit	no	20 week after full bloom	86.6282
SRR768128	whole fruit	no	25 days post anthesis	118.127
SRR768129	whole fruit	no	35 days post anthesis	182.621
SRR768130	whole fruit	no	60 days post anthesis	101.26
SRR768131	whole fruit	no	87 days post anthesis	61.6557
SRR7343308	immature fruit flesh	no	immature	56.5469
SRR7343309	immature fruit flesh	no	immature	71.4925
SRR6320494	ripe fruit flesh	no	mature	63.3264
SRR5405143	ripe fruit peel	no	mature	82.8045
SRR6320572	ripe fruit peel	no	mature	47.6157
SRR7403504	fruit	uninfected	mature	135.455
SRR7403506	fruit	uninfected	mature	136.881
SRR7403507	fruit	uninfected	mature	135.133
SRR7403500	fruit	infected with penicillium expansum	mature	217.537
SRR7403501	fruit	infected with penicillium expansum	mature	204.172
SRR7403508	fruit	infected with penicillium expansum	mature	208.448
SRR7403502	fruit	infected with penicillium expansum	mature	191.879
SRR7403503	fruit	infected with penicillium expansum	mature	192.004
SRR7403505	fruit	infected with penicillium expansum	mature	193.098
SRR1613973	Central seeds	no	20DAPF	201.965
SRR1613974	Central seeds	no	20DAPF	179.718
SRR1613975	Central seeds	no	20DAPF	188.629
SRR1613976	Lateral seeds	no	20DAPF	155.412
SRR1613977	Lateral seeds	no	20DAPF	157.853
SRR1613978	Lateral seeds	no	20DAPF	151.986
SRR3744786	stem	no	mature	88.2185
SRR3744787	stem	no	mature	90.5943
SRR3744772	stem	no	mature	88.5238
SRX765691	seedling shoot apex	no	4-6 week old seedling	144.07
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	132.576
SRR1089478	leaf	Virus-free	plantlets	67.9437
SRR1089477	leaf	ASGV-infected	plantlets	74.7341
SRR767660	leaf	uninfected	fully developed	103.539
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	204.699
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	105.56
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	62.5512
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	136.612
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	85.8368
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	152.042
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	84.0597
SRR6308182	young leaf	no	immature leaves	210.29
SRR3744769	leaf	no	mature	65.9874
SRR3744770	leaf	no	mature	63.8305
SRR3744771	leaf	no	mature	65.247
SRR5405145	leaf	no	mature	83.7708
SRR6320561	leaf	no	mature	88.5978