Gene detail

Detail information of MD07G1046100 Annotation

Gene ID	Annotation
MD07G1046100	protein arginine methyltransferase 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1046100	mRNA	Chr07	3921653	3932752	-

Sequences

CDS:

MD07G1046100

TTCAGATTTTTATTACTGTTATTAGGGTTTGTAGAGGGTTTAAGGTTCAAAGCGAAGACACCCTCCCTCCTTCCTTTCTCTCTCAGATTACTCATGGCGAAGAACGGCTCCGAATACGAACCCACATTCACAGACGACGACGACGAAGAATCCGAAGAGCTCCAAGAGTGGAACGATTGGAATGCAGAACCAGAAGAAGAAGACGAAGAAGAAGAAGAGGGCTCAGACTTGCTGTGCTTGTTCTGCGACACCAGGTACAGCTCGTGCGACGACCTCTTCGACCACTGCACTTCGACCCATCGTTTCGACTTTCAGGCCGTTCGGAGAGCGCTGGGTCTGAATTTCTACGGCTCCTTCAAGCTCATTAACTTCGTTCGCTCTCAGGTTGCTGAAAACAGATGTTGGAGTTGCGGGCTGACCTGTCATTCCAACCAAGATCTACAGAATCATTTACATGAAACAGTCAATTTCAAAGACATTACACCTGGATGGGATAGTGACGAGTATCTAAAACCTTTCTTGCAAGATGATTCGGTCTTGTATAGCTTTGGTGAAGATGAAGAAGGTGAAGATGACTATGCTGCAGCAGTTGACAAGGACGAACTTATGAGTGATTTGAGGCAGTTTGAAGAGATCTGCATAGATCATGATATTCATGTGCCAAAGATTGCTATTGATTATGATACCTCTAATGAAAGTGGGAAAAATGTTGCTTCATCATCCAATAGCCACTTGAATAATGTGAATTCTCCTGGAAAGGTGGCCATCAATGGTTTGGATTCAGGAGAACATGTTGGGTCAGCTGATAGAAAGAAAAAAGAACAGCTTTTAAGAGCGTATATTCCAAATCATGGTTCAAAGGATATCAAGAATGTTAACAATGACTACTTTGGCGCTTACAGTTCATTTGGCATTCACAGAGAGATGCTCAGTGATAAGGTAAGAATGGATGCTTATGGACAAGCTATTTTAAAGAACCCCTCTCTCTTGAAGAGTGCAGTGGTGATGGATGTAGGTTGTGGCACAGGTATACTAAGTCTCTTTGCAGCCCAAGCAGGTGCTTCAAAGGTAATTGCAATTGAAGCCAGTGAGAAAATGGCTTCCGTGGCAACTCGGATCGCAAAAGATAATGGTCTTTTGTCTAGTAAGAGCCCTGGTGAAAGTACTAACCATGGCACTGGGGTAGTAGAAGTGGTTCAAGGTATGGTTGAGGAGCTTGATAAATCCATACTAATTGAACCTCATAGTGTTGATGTATTACTGAGTGAATGGATGGGGTACTGCCTACTTTATGAGGCAATGCTCAGTTCAGTGCTTTATGCACGGGATCGGTGGTTAAAACCTGGAGGTGCCATGCTTCCTGATACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGCCACCAGTCTTCCATTTTGGGAAAATGTGTATGGTTTCAACATGTCTTCTGTTGGCAAGGAGCTTGTTGAAGGTGCAGCACAAATCCCTATTGTAGATACGGTGGATGGTCATGGTTTAGTGACCAATGCTGCTGTTCTCCAGAGCTTTGACTTGGTGACAATGAAGCCTGATGAAGTCGATTTTACTGCAAGTGTTGAGTTGGAACCAAACTTCAGCAGTGCAGCTAGCAGCTTAACTGATTTGGAATCTGAAACAACCTGGTGTTTTGGAGTTGTCTTGTGGTTTGAGACTGGTTTTACCAGCAGGTTCTGCAAAGAAACGCCGGCTGTTTTGTCAACATCCCCATATACTCCCAAAACGCACTGGCAGCAAACAATTTTGACATTTAAGGAACCAATTGCTGTGACATCAGGAAAATCTAACGTGGACGGATCAGCAGCAGTTGGCACTGAAGCTTGTCCGGCTGCAAGGATTCATCTGCGAATAAGCATTGCTCGTGCTTCCCATCATCGTGACATTGACATTTCCTTGGAAGCTGCTGGAGTTGATCCTCATGGTCGGAAGCGTAATTGGCCTGTTCAAATTTTTAATCTTGGTTAGTCTGATGATCAAAATTCGGGATCCTGATTGCCCCTACTTCTCAACATTGACATTTTACGAGAAACTGCTGGGGTTGATCTTGATTGTCAGAACCACAATTTGACCTGTGTAACTTTAGTCGACATTGGCATACCGATTCAGACCTAAGATCGGCCGACTTAAAGCGGTCTAGTTTTGTACCGTCTGTGTTGTTTCACTTCTATTTTGGTTCCGAAGAATTTTCTAGTTTGTGTTTATTTCCTTGCGGAGTTTATTCATAAAAAAAAAACCATGCTGTAACTTTATTTAATTAAAAAAACTTAAATT

Protein:

Gene family

Gene family	Subfamily
Epigenetic Regulators	PRMT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G12270.1	1	ATPRMT3;PRMT3\|ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3;protein arginine methyltransferase 3
Prunus persica	Prupe.2G042600.1.p	1	protein arginine methyltransferase 3
Pyrus communis	PCP002559.1	1	-
Pyrus x bretschneideri	Pbr041674.1	1	-
Rosa multiflora	Rmu_sc0002687.1_g000007.1	1	-
Rosa multiflora	Rmu_sc0006561.1_g000035.1	0.951	-
Rubus occidentalis	Ro07_G22198	1	-
Fragaria vesca	mrna14183.1	1	protein arginine methyltransferase 3
Vitis vinifera	GSVIVT01036648001	1	protein arginine methyltransferase 3
Populus trichocarpa	Potri.001G030200.1	1	protein arginine methyltransferase 3
Nicotiana benthamiana	Niben101Scf10431g00032.1	1	protein arginine methyltransferase 3 LENGTH=601
Oryza sativa	LOC_Os07g44640.1	1	"ZOS7-13 - C2H2 zinc finger protein, expressed"
Zea mays	GRMZM2G061996_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0006479	protein methylation	biological_process
GO:0008168	methyltransferase activity	molecular_function

KEGG

KO	Description	Enzyme
K11436	type I protein arginine methyltransferase	EC:2.1.1.319

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08241.8	Methyltransf_11	306	421	5.00E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.51391
SRR5252888	dormant buds	no	dormant buds(0 month)	11.3
SRR5252889	dormant buds	no	dormant buds(0 month)	8.48226
SRR5252886	dormant buds	no	dormant buds(1 months)	6.79709
SRR5252887	dormant buds	no	dormant buds(1 months)	9.31512
SRR5252884	dormant buds	no	dormant buds(2 months)	6.75503
SRR5252882	dormant buds	no	dormant buds(3 months)	8.83024
SRR5252883	dormant buds	no	dormant buds(3 months)	8.2534
SRR5252880	dormant buds	no	dormant buds(4 months)	14.5105
SRR5252881	dormant buds	no	dormant buds(4 months)	11.7211
SRR5252878	bud break	no	bud break	12.8638
SRR5252879	bud break	no	bud break	21.6066
SRR3744766	flower	no	mature	2.07252
SRR3744767	flower	no	mature	1.75581
SRR3744768	flower	no	mature	1.98042
SRR6308190	stigmas	no	open flowers	1.39807
SRR6308181	styles	no	open flowers	3.13949
SRR6308188	filaments	no	open flowers	9.57169
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.29699
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	7.18271
SRR6308194	sepals	no	open flowers	6.76533
SRR6308193	receptacles	no	open flowers	12.3482
SRR6308189	ovaries	no	open flowers	5.39897
SRR3384922	fruit	no	1 week after full bloom	10.9028
SRR3384921	fruit	no	2 week after full bloom	9.25618
SRR3384920	fruit	no	3 week after full bloom	6.45226
SRR3384919	fruit	no	4 week after full bloom	7.12175
SRR3384923	fruit	no	5 week after full bloom	6.50421
SRR3384918	fruit	no	6 week after full bloom	4.84916
SRR3384917	fruit	no	8 week after full bloom	3.88408
SRR3384916	fruit	no	10 week after full bloom	4.85886
SRR3384915	fruit	no	12 week after full bloom	6.00692
SRR3384914	fruit	no	14 week after full bloom	4.78935
SRR3384913	fruit	no	16 week after full bloom	3.1994
SRR3384912	fruit	no	18 week after full bloom	4.4247
SRR3384911	fruit	no	19 week after full bloom	3.78911
SRR3384910	fruit	no	20 week after full bloom	4.95451
SRR768128	whole fruit	no	25 days post anthesis	6.91424
SRR768129	whole fruit	no	35 days post anthesis	6.83829
SRR768130	whole fruit	no	60 days post anthesis	4.82322
SRR768131	whole fruit	no	87 days post anthesis	4.70177
SRR7343308	immature fruit flesh	no	immature	10.0982
SRR7343309	immature fruit flesh	no	immature	8.81368
SRR6320494	ripe fruit flesh	no	mature	2.62532
SRR5405143	ripe fruit peel	no	mature	4.45411
SRR6320572	ripe fruit peel	no	mature	2.63732
SRR7403504	fruit	uninfected	mature	3.44579
SRR7403506	fruit	uninfected	mature	3.20067
SRR7403507	fruit	uninfected	mature	3.60154
SRR7403500	fruit	infected with penicillium expansum	mature	3.42925
SRR7403501	fruit	infected with penicillium expansum	mature	3.41794
SRR7403508	fruit	infected with penicillium expansum	mature	2.902
SRR7403502	fruit	infected with penicillium expansum	mature	4.91067
SRR7403503	fruit	infected with penicillium expansum	mature	3.35709
SRR7403505	fruit	infected with penicillium expansum	mature	3.48514
SRR1613973	Central seeds	no	20DAPF	14.4744
SRR1613974	Central seeds	no	20DAPF	14.6234
SRR1613975	Central seeds	no	20DAPF	12.2979
SRR1613976	Lateral seeds	no	20DAPF	11.0116
SRR1613977	Lateral seeds	no	20DAPF	12.0495
SRR1613978	Lateral seeds	no	20DAPF	12.0192
SRR3744786	stem	no	mature	3.32034
SRR3744787	stem	no	mature	3.49297
SRR3744772	stem	no	mature	3.4036
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.5435
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.8727
SRR1089478	leaf	Virus-free	plantlets	2.19695
SRR1089477	leaf	ASGV-infected	plantlets	1.86392
SRR767660	leaf	uninfected	fully developed	2.92588
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.220294
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.55825
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.39894
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	8.74239
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.99752
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.28289
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.01966
SRR6308182	young leaf	no	immature leaves	14.6873
SRR3744769	leaf	no	mature	1.74865
SRR3744770	leaf	no	mature	1.41628
SRR3744771	leaf	no	mature	1.30743
SRR5405145	leaf	no	mature	4.39383
SRR6320561	leaf	no	mature	6.22018