Gene detail

Detail information of MD07G1051700 Annotation

Gene ID	Annotation
MD07G1051700	ubiquitin-specific protease 12

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1051700	mRNA	Chr07	4749170	4752622	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G069300.1.p	1	ubiquitin-specific protease 12
Prunus persica	Prupe.2G069300.5.p	0.908	ubiquitin-specific protease 12
Prunus persica	Prupe.2G069300.3.p	0.908	ubiquitin-specific protease 12
Prunus persica	Prupe.2G069300.4.p	0.908	ubiquitin-specific protease 12
Rosa multiflora	Rmu_sc0009365.1_g000022.1	1	-
Rosa multiflora	Rmu_sc0009365.1_g000010.1	0.915	-
Rosa multiflora	Rmu_sc0009365.1_g000025.1	0.754	-
Rosa multiflora	Rmu_sc0000499.1_g000003.1	0.668	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.22	MATH	26	155	4.20E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0270707
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.442577
SRR5252886	dormant buds	no	dormant buds(1 months)	1.94124
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0736842
SRR5252884	dormant buds	no	dormant buds(2 months)	2.2358
SRR5252882	dormant buds	no	dormant buds(3 months)	1.06218
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0643016
SRR5252880	dormant buds	no	dormant buds(4 months)	0.117785
SRR5252881	dormant buds	no	dormant buds(4 months)	0.130737
SRR5252878	bud break	no	bud break	0.234635
SRR5252879	bud break	no	bud break	4.03287
SRR3744766	flower	no	mature	0.617971
SRR3744767	flower	no	mature	0.562547
SRR3744768	flower	no	mature	0.58754
SRR6308190	stigmas	no	open flowers	0.187242
SRR6308181	styles	no	open flowers	0.241499
SRR6308188	filaments	no	open flowers	0.725621
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.124721
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.103334
SRR6308194	sepals	no	open flowers	0.10015
SRR6308193	receptacles	no	open flowers	0.479214
SRR6308189	ovaries	no	open flowers	0.519224
SRR3384922	fruit	no	1 week after full bloom	1.43637
SRR3384921	fruit	no	2 week after full bloom	1.01659
SRR3384920	fruit	no	3 week after full bloom	0.526543
SRR3384919	fruit	no	4 week after full bloom	0.583737
SRR3384923	fruit	no	5 week after full bloom	0.416347
SRR3384918	fruit	no	6 week after full bloom	0.154493
SRR3384917	fruit	no	8 week after full bloom	0.0743496
SRR3384916	fruit	no	10 week after full bloom	0.0965862
SRR3384915	fruit	no	12 week after full bloom	0.22856
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.0652726
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.176252
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	2.79215
SRR768129	whole fruit	no	35 days post anthesis	0.949061
SRR768130	whole fruit	no	60 days post anthesis	0.856795
SRR768131	whole fruit	no	87 days post anthesis	0.184262
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.325728
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	8.5206
SRR1613974	Central seeds	no	20DAPF	8.49205
SRR1613975	Central seeds	no	20DAPF	7.65544
SRR1613976	Lateral seeds	no	20DAPF	7.78573
SRR1613977	Lateral seeds	no	20DAPF	8.64971
SRR1613978	Lateral seeds	no	20DAPF	9.10566
SRR3744786	stem	no	mature	0.152595
SRR3744787	stem	no	mature	0.125814
SRR3744772	stem	no	mature	0.301162
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.632999
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.266406
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.323011
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.0778308
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.560212
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.0670753
SRR3744769	leaf	no	mature	0.0259874
SRR3744770	leaf	no	mature	0.0547283
SRR3744771	leaf	no	mature	0.0539059
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0