Gene detail

Detail information of MD07G1077800 Annotation

Gene ID	Annotation
MD07G1077800	Restriction endonuclease

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0550	crossover junction endonuclease MUS81 [EC:3.1.22.-] DNA topoisomerase III [EC:5.99.1.2] UV excision repair protein RAD23 ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1077800	mRNA	Chr07	7459754	7475669	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G020900.1.p	1	"Restriction endonuclease, type II-like superfamily protein"
Pyrus communis	PCP039038.1	1	-
Pyrus x bretschneideri	Pbr040747.1	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0004518	nuclease activity	molecular_function
GO:0006259	DNA metabolic process	biological_process

KEGG

KO	Description	Enzyme
K08991	crossover junction endonuclease MUS81	EC:3.1.22.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02732.11	ERCC4	241	371	6.30E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.12874
SRR5252888	dormant buds	no	dormant buds(0 month)	6.68638
SRR5252889	dormant buds	no	dormant buds(0 month)	4.77933
SRR5252886	dormant buds	no	dormant buds(1 months)	5.542
SRR5252887	dormant buds	no	dormant buds(1 months)	3.13709
SRR5252884	dormant buds	no	dormant buds(2 months)	5.52116
SRR5252882	dormant buds	no	dormant buds(3 months)	5.22979
SRR5252883	dormant buds	no	dormant buds(3 months)	3.40807
SRR5252880	dormant buds	no	dormant buds(4 months)	7.26618
SRR5252881	dormant buds	no	dormant buds(4 months)	9.37148
SRR5252878	bud break	no	bud break	7.23733
SRR5252879	bud break	no	bud break	5.42563
SRR3744766	flower	no	mature	0.899479
SRR3744767	flower	no	mature	1.10532
SRR3744768	flower	no	mature	0.997129
SRR6308190	stigmas	no	open flowers	0.407716
SRR6308181	styles	no	open flowers	0.561148
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.52142
SRR6308192	pollen	no	open flowers	8.65072
SRR6308191	petals	no	open flowers	0.540127
SRR6308194	sepals	no	open flowers	0.959675
SRR6308193	receptacles	no	open flowers	0.487048
SRR6308189	ovaries	no	open flowers	1.13099
SRR3384922	fruit	no	1 week after full bloom	1.63199
SRR3384921	fruit	no	2 week after full bloom	1.61065
SRR3384920	fruit	no	3 week after full bloom	1.32671
SRR3384919	fruit	no	4 week after full bloom	0.887565
SRR3384923	fruit	no	5 week after full bloom	0.602905
SRR3384918	fruit	no	6 week after full bloom	0.447438
SRR3384917	fruit	no	8 week after full bloom	0.45219
SRR3384916	fruit	no	10 week after full bloom	0.713311
SRR3384915	fruit	no	12 week after full bloom	0.397168
SRR3384914	fruit	no	14 week after full bloom	0.433346
SRR3384913	fruit	no	16 week after full bloom	0.396985
SRR3384912	fruit	no	18 week after full bloom	0.266107
SRR3384911	fruit	no	19 week after full bloom	0.306273
SRR3384910	fruit	no	20 week after full bloom	0.239803
SRR768128	whole fruit	no	25 days post anthesis	2.42741
SRR768129	whole fruit	no	35 days post anthesis	1.3963
SRR768130	whole fruit	no	60 days post anthesis	0.851282
SRR768131	whole fruit	no	87 days post anthesis	0.240288
SRR7343308	immature fruit flesh	no	immature	1.70117
SRR7343309	immature fruit flesh	no	immature	1.13158
SRR6320494	ripe fruit flesh	no	mature	1.08593
SRR5405143	ripe fruit peel	no	mature	0.790935
SRR6320572	ripe fruit peel	no	mature	0.70703
SRR7403504	fruit	uninfected	mature	0.906399
SRR7403506	fruit	uninfected	mature	0.985639
SRR7403507	fruit	uninfected	mature	0.902787
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.102248
SRR7403508	fruit	infected with penicillium expansum	mature	0.147419
SRR7403502	fruit	infected with penicillium expansum	mature	0.0569881
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	2.92412
SRR1613974	Central seeds	no	20DAPF	2.95433
SRR1613975	Central seeds	no	20DAPF	2.60712
SRR1613976	Lateral seeds	no	20DAPF	2.78454
SRR1613977	Lateral seeds	no	20DAPF	2.80682
SRR1613978	Lateral seeds	no	20DAPF	2.89799
SRR3744786	stem	no	mature	1.18982
SRR3744787	stem	no	mature	1.35139
SRR3744772	stem	no	mature	1.0435
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.49829
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.84068
SRR1089478	leaf	Virus-free	plantlets	0.738613
SRR1089477	leaf	ASGV-infected	plantlets	0.286467
SRR767660	leaf	uninfected	fully developed	1.40489
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.881245
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.121918
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.283558
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.477662
SRR6308182	young leaf	no	immature leaves	4.03223
SRR3744769	leaf	no	mature	0.991136
SRR3744770	leaf	no	mature	1.01882
SRR3744771	leaf	no	mature	1.6796
SRR5405145	leaf	no	mature	0.492917
SRR6320561	leaf	no	mature	0.242106