Gene detail

Detail information of MD07G1079700 Annotation

Gene ID	Annotation
MD07G1079700	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0660	centromere complex assembly meiotic sister chromatid cohesion meiotic DNA double-strand break formation

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1079700	mRNA	Chr07	7707849	7713901	+

Sequences

CDS:

MD07G1079700

TCTGTCGACCTCTCTCTCTGGAACTCTCTCCCTCCTCTCTTTCAACGTCATAACCACCGGAACCCGCCATTCACAGCCACCAGAATCCTCCCATTCCTCTCGACCACCCATCTGAACTCATGCTTTTCTTCTTCCACTGAAGGTTTCTATCGAAGCTCGAACTCTTGAAGTCGTCATCCACTCCTTGATAGCCCATCGTTCGCTGCTCTCAGTTCCTATCGCCGCTGTTGGACTTGGTCCGTCCGAACACCGAGGCAATCTTCAGATTTCATGGATCAACCTGCTAGAAATGAGCATATAATTCAATGAGACCAGACCATACTTAAAAGTTTCGGTATACGGTCAGTCTATTTAAGGTCCAAGTTTTCAGTTTCCGGTTCATCTTTATGGCCTACAAACTGTTTGGCACTGGTTCTTGGTTTGGGACCTAACCCCGTCAAACTGGAATGAACTTTTAATCGGTAGACAGGCCCTTTCAACCCCCAAGCATCCCTCATCCTTTTGAATTCTAAGTTCATTCCTCAATGGCTATAACTATAGTTTCAAATATGCAAACCCAACGGCTAATTTTGAGAAATGTAGCTCCCAGAACCCTCACAACCTTCACAAAACCAACCAAGTACTCACTCTTTCACTCTCATAGACCTCATTCTTTTGCTTATTGTCCACCAAATGACCTGGAACTTGGTCTTAAAAGTATGCAATCCCAAGAACTCTGTAGTAGTACAAGCCAAGAACCGTTTTCGTCAGCTTCTCTATCAGATTCTCTTTTGGTGGAAAAGATTTTATTAGGTTTGAAGCAAGGTACCCTCACGTCCTTGCGCAGTTTTCGGTTAAACCCATTTCTTATTGTTGAAGTTCTTTCTCGCTGCCGTGAAAATTTGCAACTGGGTCTGAAGTTTGTTGATTTGATTCTGTTAAATAGCCATAATTTTAAACATTCGTCAGAATCTCTGAGTGCAATGATTCACATGTTGGTGCGTGGTCGAAGGGTGTCGGATGCACAACCTCTGATTCTTAGAATGGTTAGAAAGAGTGGCATTTCGCGTGTTGGAGTGGCAGACTCTTTGGTTTCAACTTATAGCAGTTGCGGCTCAAGTTCTTTGATCTTTGATCTGTTTGTTAGAACGTATGTGCAGGCTAAGAAGTTGAGAGAAGGATTTGAGGCGTTTCAGGTGTTTAGAAGAAAGGGATTTTGTGTTTCGATAAATGCTTGCAATAGTCTTCTTGGTGGGCTTGTGAAGGTCGGGTGGTTTGATTTGGCATGGGTGGTCTACGGGGAAGTTGTTAGCAGTGGGATTCAGTTAAACGTTTATACACTAAATATAATGGTTAATGCCTTATGCAAAGCTCGCAAAATTGAGAGCGTTAAATTCTTCTTATCGGATATGGAAGAGAAGGGGGTGTTTTCAGATATTGTGACATATAATACACTAATCAATGCATATTGTCGCGAAGGGCTTCTAGAAGAAGCTTTTCAGTTAAAGAACTCTATGTCTTCTAAGGGGTTGAAACCTGAGCTTTTCACGTACAATGCTATCATGAATGGTTTATGTAAAGTAGGAAATTATGCAAGAGCAAAGGAACTGTTGGATGAAATGTTGCAAGGTGGATTGAATCCTGATACTACTACTTATAATACAATGCTTTTTGAGAGCTGTAGAAAAGGTGATATTTTAGAGGCTGAGGAAATTTTCCATGAAATGTCACTGAGAGGTGTTGTTCCTGATATAGTTAGTTTCAGTTCACTTATTGGGGTTTTTTCGAGGAACAAAAATATTGATCGTGCGTTACTATATTTTCGAGATATGAAAAGGGCAGGCTTGGTTCCAGATAATGTGATCTACACCATTCTTATAGATGGATATTGTAGAAAGGGAATGATGTTAGAGGCTTTGAAGCTGCGTGATGAAATGCTTGAGCAAGGTTGCACTATTGATGTGGTAACGTTCAATACAATTTTAAATGGACTGTGTCGAGAGAAAATGCTTTCTGATGCAGATGAGCTTTTCAATGAAATGTTGGAAAGGGGTGTCATTCCTGATTTTTATACTTTCACAACGCTCATTCATGGCTATTGCAAGCACGGGAATATGACTAAATCTCTCAATCTGTTTGATGCAATGACTAATGGAAATATTAAGCCTGATATTGTCACATACAACACATTGTTTGATGGCTTCTGCAAACTAGGTGAAATGGATAAAGCTAAGGAGTTATGGGGTGACATGGTTTCAAGAAGGATATTACCCAATCACATTTCATATGGCATCCTAATCAATGGATTTTGTAGCTTGGGGAACGTGCATGAGGCGTTTAGGTTGTGGGACCAGATGATTGAAGAAGGCATCAAACCCACTCTAGTTACTTGTAACACTGTCATTAAAGGTTATTGCCGCTCTGGTGACACAACAAAGGCAGATGAGTTCTTAGGCAAAATGATTTCAAAAGGAGTTGTTCCTGACAGTATTACTTACAACACTTTGATTAACGGATATGTAAAAGAAGAGAATCTGAACAAAGCATTTTCCTCAGTTCAGGAGATGGAAAAGCAAGGGATACTGTCGGATCAGTTTACATACAATATAATTCTAAATGGGTTCTGTAGGCAAGGTAGAATGCACGAAGCCGAGCTAGTATTGCGGAAGATGATTGAGAGAGGTGTAAAACCTGATAGATCCACTTATACGTCATTGATAAATGGACATGTGACCCAGGACAATTTGAAGGAGGCATTTCGGTTCCATGATGAGATGCTTCAAAGGGGATTTGTGCCAGATGATGAATTCTAGTTTGCTCTTGCAGCTGAAGGTTGGATATTCTCTTAAATCTCATATTTACTTGAGGAGATGAAGAAACCTTCTTCCTTCAAATGTAAGTCCATGTTTCAGTAGTACGTACAGTGATGGCTAGAAGACATATTATTCCAGGAATGGAGCCAGATTCAGTCCGGTGAGATCAGAGAGTTGAAGCAGGTTAGATGACCACTCTAGCATATTCGAGAACCTCTGTTGCAGGGAAGACTGGAGAGGCTGGACTCACTGCCCAGTGCTGTAAGGTTATAATTTGTGAACTCCAAGCTCATCTCGCTCTTTTGGATGACTAACGAGCCATCTCAAAAAAACAGAGACTAATTACACTGAGTGATGATTTTTGAGGAATACCAAAAGCAAAAGAAAAATTGCACATCTGAAAAATAAGGTGTGACTGGCCTGATGAAGCCAGTACGAAGCCAGTACGAATGTGCCCTCATCAGTCATCAGTCATCACAGTGTGCTGCAAAAATGGCACCCTGCAATAATTTGGGAGGAGAGGCCGGGGGAGCCATCTACAGGCTTTTGTAATGTTGGTATCGGCAGCTGTTTTCGGAATTTGACGTGACAGGTTGTGAAAAATTCCTAATATCGATCGGTTTTACAAATCCATTGAGAACAAAAATTGTGAATCTTCAAATTCCTTTACTATTTATTTTCATCAATTCTCTTGTAAATTAGAACGATGCTA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G01110.1	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Prunus persica	Prupe.2G102900.1.p	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Pyrus communis	PCP015439.1	1	-
Pyrus x bretschneideri	Pbr039466.1	1	-
Rosa multiflora	Rmu_ssc0000350.1_g000039.1	1	-
Rubus occidentalis	Ro03_G26570	1	-
Fragaria vesca	mrna14641.1	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Vitis vinifera	GSVIVT01037263001	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Populus trichocarpa	Potri.001G276500.2	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Nicotiana benthamiana	Niben101Scf00072g04001.1	1	Pentatricopeptide repeat-containing protein
Oryza sativa	LOC_Os03g06910.1	1	PPR repeat containing protein
Zea mays	GRMZM2G169280_P01	1	Tetratricopeptide repeat (TPR)-like superfamily protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.600006
SRR5252888	dormant buds	no	dormant buds(0 month)	3.0275
SRR5252889	dormant buds	no	dormant buds(0 month)	3.35131
SRR5252886	dormant buds	no	dormant buds(1 months)	2.79179
SRR5252887	dormant buds	no	dormant buds(1 months)	3.02768
SRR5252884	dormant buds	no	dormant buds(2 months)	3.86816
SRR5252882	dormant buds	no	dormant buds(3 months)	3.15214
SRR5252883	dormant buds	no	dormant buds(3 months)	3.14415
SRR5252880	dormant buds	no	dormant buds(4 months)	3.29105
SRR5252881	dormant buds	no	dormant buds(4 months)	3.67979
SRR5252878	bud break	no	bud break	4.04927
SRR5252879	bud break	no	bud break	2.7262
SRR3744766	flower	no	mature	1.06295
SRR3744767	flower	no	mature	1.01542
SRR3744768	flower	no	mature	1.04077
SRR6308190	stigmas	no	open flowers	1.59464
SRR6308181	styles	no	open flowers	1.34021
SRR6308188	filaments	no	open flowers	1.00346
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.882364
SRR6308192	pollen	no	open flowers	0.588287
SRR6308191	petals	no	open flowers	0.859349
SRR6308194	sepals	no	open flowers	0.832689
SRR6308193	receptacles	no	open flowers	1.16231
SRR6308189	ovaries	no	open flowers	1.48531
SRR3384922	fruit	no	1 week after full bloom	0.363156
SRR3384921	fruit	no	2 week after full bloom	0.417662
SRR3384920	fruit	no	3 week after full bloom	0.540821
SRR3384919	fruit	no	4 week after full bloom	0.479653
SRR3384923	fruit	no	5 week after full bloom	0.570183
SRR3384918	fruit	no	6 week after full bloom	0.592416
SRR3384917	fruit	no	8 week after full bloom	0.519287
SRR3384916	fruit	no	10 week after full bloom	0.674597
SRR3384915	fruit	no	12 week after full bloom	0.704273
SRR3384914	fruit	no	14 week after full bloom	0.774116
SRR3384913	fruit	no	16 week after full bloom	0.509524
SRR3384912	fruit	no	18 week after full bloom	0.578827
SRR3384911	fruit	no	19 week after full bloom	0.868952
SRR3384910	fruit	no	20 week after full bloom	0.718163
SRR768128	whole fruit	no	25 days post anthesis	1.53365
SRR768129	whole fruit	no	35 days post anthesis	0.541342
SRR768130	whole fruit	no	60 days post anthesis	0.504229
SRR768131	whole fruit	no	87 days post anthesis	0.569306
SRR7343308	immature fruit flesh	no	immature	0.937727
SRR7343309	immature fruit flesh	no	immature	1.06867
SRR6320494	ripe fruit flesh	no	mature	0.515725
SRR5405143	ripe fruit peel	no	mature	1.56511
SRR6320572	ripe fruit peel	no	mature	1.35112
SRR7403504	fruit	uninfected	mature	0.896369
SRR7403506	fruit	uninfected	mature	0.880201
SRR7403507	fruit	uninfected	mature	0.823404
SRR7403500	fruit	infected with penicillium expansum	mature	0.228408
SRR7403501	fruit	infected with penicillium expansum	mature	0.338952
SRR7403508	fruit	infected with penicillium expansum	mature	0.139627
SRR7403502	fruit	infected with penicillium expansum	mature	0.431809
SRR7403503	fruit	infected with penicillium expansum	mature	0.422009
SRR7403505	fruit	infected with penicillium expansum	mature	0.406431
SRR1613973	Central seeds	no	20DAPF	0.809454
SRR1613974	Central seeds	no	20DAPF	0.780429
SRR1613975	Central seeds	no	20DAPF	0.583706
SRR1613976	Lateral seeds	no	20DAPF	0.67071
SRR1613977	Lateral seeds	no	20DAPF	0.573057
SRR1613978	Lateral seeds	no	20DAPF	0.818026
SRR3744786	stem	no	mature	1.36169
SRR3744787	stem	no	mature	1.2647
SRR3744772	stem	no	mature	1.2716
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.25395
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.56813
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.203922
SRR767660	leaf	uninfected	fully developed	0.400242
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.420287
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.174114
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.27034
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.340146
SRR6308182	young leaf	no	immature leaves	0.781204
SRR3744769	leaf	no	mature	1.10928
SRR3744770	leaf	no	mature	1.15135
SRR3744771	leaf	no	mature	1.3932
SRR5405145	leaf	no	mature	1.0893
SRR6320561	leaf	no	mature	1.38289