Gene detail

Detail information of MD07G1123900 Annotation

Gene ID	Annotation
MD07G1123900	disease resistance protein (TIR-NBS-LRR class)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0450	UV excision repair protein RAD23 nucleocytoplasmic transporter activity proteasome binding structural constituent of nuclear pore attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation meiotic chromosome condensation meiotic sister chromatid cohesion ubiquitin binding cohesin complex nuclear chromosome damaged DNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1123900	mRNA	Chr07	17254982	17260958	-

Sequences

CDS:

MD07G1123900

CCTTCAAGCTTGAGCTCACAAACCAGTAATCTTCTGGGTCAATGTAGTTTTACTCCTCCTTCACCTCAATCATGCAGTCAGCCGTGCTCTCCCATTAACCCATCGGCCCAGCTTGGCTTTTGCCACCAACAACCGGATGGTTATGAATGCCAATTGCCAAGTTTGGTGACTTATTACACCATGCCTACCAACCGTTCGATGAAATTCCTCTTAAAAGCCTTGGGTCTGGAAACCCTGTTTTCCTTTCGCTGTACGCACTACCCACAATTTGGCCAGCTGAAAATAACTTTTTAACAATTGAAGTAGCGTTGACACCGAAAGTCTTCGGCAATGTCGCGTTTGTTTTGTCAAGAACTTAGGAAATTGCTAAACCCCATTTGCAGATTTTGTCCAAACTAACCCTCACAGTCCTTCAATGATCCCCCAAGCAGGCGTTTCTTCTTCTTCTTCGCCGACGCCGCTGTGGACGTACGACGTGTTCCTCAGTTTCAGAGGCACAGACACCCGCACAAGTTTTACTGACCACCTCTATGCCGCGCTGACTCGAAAGGGAATTATCACATTCAGGGATGATGAGAAACTCAAGAAAGGAAGTTCCATCTGGGAACTCTACAATGCAGTTGAAGAATCAAGGTGTGTCATTGCCATTCTTTCGAGCAATTATGCCGACTCAACTTGGTGTATGGAAGAGCTTGCAAAGGCTGTTGAGTGCAGGAGAGTAATGGGACAGATACTAGTCCCGGTTTTCTATCACGTACATCGATCCGAGCTGCGAAACCAAACAGGGAATTTCGGGAAAGCGTTTTGTAAGCTTGAGGAACGAGCCGTTAAAGGCAATTTAGAAAAAGTACAGAGGTGGAGAGCTGCACTTGTTGAGGTAGCTGACCTCTCTGGATTCCATTTGCAAGACGGATTTGAATCAGAACTTATTCAAACTATTGTCGAAAATATTTCCACCAAATTGAATCAAACAATCTCCAGTGTATTTACGGATTTAGTTGGGATGGATTCTCGCGTAAAAGAAATGCTTTCGTACTTAGAGATGGGGTGGAATAATGTACGCATCATAGGGATTTGGGGGATGGGGGGCATCGGAAAGACAACTATTGCCCATGTAGTTTCTGAAAGGATACGTGCTCAGTTTGAAGCTTACAGCTTTCTTGCCAATGTTAGAGAGGTAAGTGAAAAACAAGGTCTAGTTCAATTACAAAAGAAACTTCTTTCTGATATATTGCTGGAAAGTAATGTAAGCATGCACAACACTCATACAGGAAGCAGTATAATAAGGCACAGACTACGAACTAAAAAAGTTTTTATCATTCTTGATGATGTGGATCGGTTAGAACAATTGAAGGCATTGTGTGACCATAGTTGGTTTGGTCCAGGGAGTAGAATCATAATAACCTCAAGAGATAAAGGTGTATTGCTTAAAGGTGGAGTGGACGAAATAAATCAGGTTAAGGCGTTAACTAACAATGAAGCTCTTCAGCTCTTTAATTGGAAAGCCTTTAGGAGTGACCAGGTTGGAAAAGATTTTTTCCAGCTATCCAAGAAATTTGTAAAAAATGCTTATGGCCTCCCATTAGCCATTGAAGTTTTGGGTTCATCCCTCTTTCGTAGAAGTGTTGAAGAATGGTCAAGTGCATTGTTTAGGCTAGAAAGAAAGCCTGTTGAAATGCTTTTTGATGTACTTAAAGTAAGTTTTGATGGATTACAAGAAATAGAAAGGAAAATATTTTTGGACATTGCATGTTTCTTTAAAGGAGAGGACAAATATCATATAACAAGAATACTAGAAAGTCGTTATGGCCACTGTCCAATCATTCATTTTATAGTTCTCACTGAAAAATGTCTTCTAACTACATTCGGAAGAAAATTGTGGATGCATGATTTGATAGAACAATTGGGGTGGGAAATTGTTAGTCGGGAGCATCCTGAGGCAGGCAAGCGTAGCAGGTTGTGGCTTCCCAAAGATATTGTCCCTCTGCTTGTACATAATAGGGGAACAACTTCGGTGCAAGGTGTATTTCTGAATTTTGAAAAAGAAAAGGAGATTAAATTGAGGGTTAATGATCCTTTTTCGGAAATGAAGAAACTAAAATATCTCAAAATTTGGAACGGAAACTTTTCTGTGAACACCAAATATCTTTCTAATGAGTTGGCACTTTTGGAATGGCATGAATGTCCTTTAAATTCTTTGCCATCAGGATTTGAATCAGATAAGCTTGTCGAACTCAAGATGAATTCAAGTTGCATCAAACAGCTATGGACGGGGGAAAAGCGTTGGAGCAGGCTAACTTTCATTGATATGAGTGACTCCCAGTACTTGATCAAGACCCCAGACTTTACTGAGGTTCCAAATCTTGAGATTTTGGTGCTTCAAGGTTGTGCAAGATTGGTTGAGGTTCACCCAACCATTGGAGGTCTCAGAAACCTTATTTCTTTGAATATGAGAAACTGCAAATCTGTTGAGAGCCTTCCACCTTTCAAAAGTTTGAAATCTCTTAAAACTCTTACTCTGTCCGCTTGTTCAAGACTCAAGAAGTTTCCTGAAGTTGAAGGAAATATGAAATGCTTGTTGAGAGTCTATTTGGATGAGACTGCTATAGAGGAATTGCCTACATCAATTCAACATTTGACGAGTCTTACCTTGTTGAGCTTAAGAGACTGCAAAAACTTTTTGTCTCTTCCGAATACCATTCAATATTTGACATCTCTGAAAAGCCTCATTTTAGCTGGTTGCTCAAAATTTGATGAGATACCTGAGAATCTGAATTGTGTGGAATGCCTAGAGGAGCTTGATATAAGTGGAACTGCTATAAGAGAATCACCGTCTGTTGTAGGTATGTTGAATCTGAAATATCTATCCTTCCGGGGATGTCGAGATCTGCCTTCAAATTCGTGGCACTCGCTCTTTAATTGTTGGTGGTGCAGCAAGAGCTATGTCCCCACCAGTTTGTTGTTGCTAACCTCAATCTCAAGTTTAACTTCTTTGACAGAGCTAGACTTAAGTTATTGCAATTTAATAGATGGAGCAATTCCCCAAGATTTTGGTCACTTAATCTCCTTAAGAAAATTAAATTTGAGTGGCAATAATTTTGTTCGGCTACCAGAAAGCATCTGTCAACTCTCCAAGCTTGAATCTCTCAACTTGAGCAATTGTCGAAGGCTTCAGTTGCTTCCTGAACTGCCGTTAAGTGTTCGGCATGTGAATGCAGAAGATTGTATTTCACTGATGTGTTTCCAAGATGAATTCAAATTATGGACTTCAGCTGTCTCAGGAATGACTACTGTCAATTCCCACAGTTCATCCAATAATCCAGAATATTACACGTCAGCACCAAGACGTATCTCAAGAACTTACACTTCTGGAGGCTTTGGAATGACTACTTTCAGTATATTGTCTGAAGATCAAGAATGGAAACCATGTGTTGATTCATGGTTACCAACTCAAGTGTTTCAAAGAGACCTATTGGATTGTAGGTCATACTCCATGAGCTCTGTTTGTGCCCAAATTGAAATCCCAGAGTGGTTCAGCAATATAGTTACTGGCGATTCCATAGCAATCCCAATACCTCCAAATTTGAAAGATAATAAGAAGTGGATGGGGGTTGCTGCTGTTTTCTTAGTCAAGGGACGGCCTTCTGTTTCCAATAGTGAGTCAGATACAGAAGCTTCTGATTACTTGTACAGATTCACATTGGGAACTCATGAGTTTCGACTGGAACCATATCTTCTTGACTGGAAGGAAAGTTGCACTTTTGTCAGGTCTAGTTCTGATGATTTTCTTTGTTTTTTCTATGAATCTCATATGCGCTTTCCAAAGACGTTAAATGAATCAAGTTCAATGTGGGCATTATTGGAAGCCATTAACCCGTGCATGGAGGTCCAGAAATGTGGGATACGTCTTGTTTACAAGCAAGATACTGCAGGGTTTATCCAGACATTCATGCTGTGTTTTGGTGGAGGCCAACATGAAATGAATCTGCAGGAAGTTGAAAAAGCTACATTTGAGTCTGGATGGTTTAATCTAGACAATAAGTACATTTTCAGATGGGATTTTCTCTCTTTAAAAAAGGGTCATCATCTCCCGTGTGGACTCCTAAGGGCAGACTTTTATATGGACTTGTATGTACTTATGAAGAAAATACCTTATTGTCGTCAAATTTGGGGTTTTACGTACCACGGGGCACAGTTTTTTGAGCGTTTCATTCTCTCGAATTCTAGTAGCATGAGCTGCACTTTGTTTCAAACCGATAAACCTGGCGCAGAGGTTCAATATGTGCATTGCTCGGTGATAGTAACTGTATGTGCTTTCATCGCTCCACGAACATCCAAACATCGATTCTTGAGAATTTTGACACTCCCAATTCATTGTTTCTCTTGACATTTTTCTGTAATATGGTGTTCGGCTGCAGAAGATGGTAATCAAATGATAAGAGTACAAGGCATCATGAAAGATTGGTTCATAAGGCTTACTGATCATGTCTGATGCTCAAGAGCACGGGAAACGCACCCGTTGTAACTTGTAAGTAGCCTTAGATCTTTCTCACTAGATCAATTTTGTTATTTTTGGGCTACTTCCTTTTGCTGCTAGTAATTACTGTGGCATTCTAGATGGATAAAGCGATATGATGTATATAACTTTTTCACGTAACATTACATTATTGATCCAGAATACCGTTGTGACGTAGGAGATTTAGCCAACT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G005600.1.p	1	"disease resistance protein (TIR-NBS-LRR class), putative"
Pyrus communis	PCP022234.1	1	-

Gene Ontology

GO term	Description	Category
GO:0007165	signal transduction	biological_process
GO:0006952	defense response	biological_process
GO:0043531	ADP binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.18	NB-ARC	201	450	1.70E-33

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.626069
SRR5252888	dormant buds	no	dormant buds(0 month)	3.98854
SRR5252889	dormant buds	no	dormant buds(0 month)	3.32752
SRR5252886	dormant buds	no	dormant buds(1 months)	2.96075
SRR5252887	dormant buds	no	dormant buds(1 months)	1.97223
SRR5252884	dormant buds	no	dormant buds(2 months)	2.47725
SRR5252882	dormant buds	no	dormant buds(3 months)	3.54936
SRR5252883	dormant buds	no	dormant buds(3 months)	2.26256
SRR5252880	dormant buds	no	dormant buds(4 months)	5.13631
SRR5252881	dormant buds	no	dormant buds(4 months)	3.89247
SRR5252878	bud break	no	bud break	4.33971
SRR5252879	bud break	no	bud break	4.08847
SRR3744766	flower	no	mature	0.351457
SRR3744767	flower	no	mature	0.261929
SRR3744768	flower	no	mature	0.312385
SRR6308190	stigmas	no	open flowers	0.370834
SRR6308181	styles	no	open flowers	0.417897
SRR6308188	filaments	no	open flowers	0.441464
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.1904
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.315188
SRR6308194	sepals	no	open flowers	0.183238
SRR6308193	receptacles	no	open flowers	0.267961
SRR6308189	ovaries	no	open flowers	0.574561
SRR3384922	fruit	no	1 week after full bloom	0.415298
SRR3384921	fruit	no	2 week after full bloom	0.395591
SRR3384920	fruit	no	3 week after full bloom	0.205828
SRR3384919	fruit	no	4 week after full bloom	0.468073
SRR3384923	fruit	no	5 week after full bloom	0.514686
SRR3384918	fruit	no	6 week after full bloom	0.201307
SRR3384917	fruit	no	8 week after full bloom	0.223566
SRR3384916	fruit	no	10 week after full bloom	0.275909
SRR3384915	fruit	no	12 week after full bloom	0.360816
SRR3384914	fruit	no	14 week after full bloom	0.299949
SRR3384913	fruit	no	16 week after full bloom	0.235526
SRR3384912	fruit	no	18 week after full bloom	0.386801
SRR3384911	fruit	no	19 week after full bloom	0.211993
SRR3384910	fruit	no	20 week after full bloom	0.318137
SRR768128	whole fruit	no	25 days post anthesis	1.00271
SRR768129	whole fruit	no	35 days post anthesis	0.308314
SRR768130	whole fruit	no	60 days post anthesis	0.479996
SRR768131	whole fruit	no	87 days post anthesis	0.361297
SRR7343308	immature fruit flesh	no	immature	0.882233
SRR7343309	immature fruit flesh	no	immature	0.781886
SRR6320494	ripe fruit flesh	no	mature	0.37785
SRR5405143	ripe fruit peel	no	mature	0.762996
SRR6320572	ripe fruit peel	no	mature	0.165222
SRR7403504	fruit	uninfected	mature	0.286546
SRR7403506	fruit	uninfected	mature	0.253872
SRR7403507	fruit	uninfected	mature	0.336211
SRR7403500	fruit	infected with penicillium expansum	mature	0.0716703
SRR7403501	fruit	infected with penicillium expansum	mature	0.141809
SRR7403508	fruit	infected with penicillium expansum	mature	0.076672
SRR7403502	fruit	infected with penicillium expansum	mature	0.197595
SRR7403503	fruit	infected with penicillium expansum	mature	0.176558
SRR7403505	fruit	infected with penicillium expansum	mature	0.297572
SRR1613973	Central seeds	no	20DAPF	0.901869
SRR1613974	Central seeds	no	20DAPF	0.824999
SRR1613975	Central seeds	no	20DAPF	0.557709
SRR1613976	Lateral seeds	no	20DAPF	0.461977
SRR1613977	Lateral seeds	no	20DAPF	0.658027
SRR1613978	Lateral seeds	no	20DAPF	0.712117
SRR3744786	stem	no	mature	0.677896
SRR3744787	stem	no	mature	0.744604
SRR3744772	stem	no	mature	0.764959
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.23339
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.03695
SRR1089478	leaf	Virus-free	plantlets	0.128384
SRR1089477	leaf	ASGV-infected	plantlets	0.0746894
SRR767660	leaf	uninfected	fully developed	0.097742
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.284531
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.247808
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.0415313
SRR6308182	young leaf	no	immature leaves	1.22805
SRR3744769	leaf	no	mature	0.509317
SRR3744770	leaf	no	mature	0.266623
SRR3744771	leaf	no	mature	0.214402
SRR5405145	leaf	no	mature	0.45573
SRR6320561	leaf	no	mature	0.50687