Gene detail

Detail information of MD07G1145100 Annotation

Gene ID	Annotation
MD07G1145100	gamma-tubulin

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1145100	mRNA	Chr07	21145505	21150091	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_sc0031640.1_g000001.1	1	-
Fragaria vesca	mrna18918.1	1	gamma-tubulin
Nicotiana benthamiana	Niben101Scf01826g02016.1	1	Tubulin beta-3 chain
Oryza sativa	LOC_Os05g06450.1	1	"tubulin/FtsZ domain containing protein, putative, expressed"
Zea mays	GRMZM2G085970_P01	1	protein_coding
Zea mays	GRMZM2G073888_P01	0.841	protein_coding

Gene Ontology

GO term	Description	Category
GO:0000930	gamma-tubulin complex	cellular component
GO:0005874	microtubule	cellular component
GO:0007020	microtubule nucleation	biological_process
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0031122	cytoplasmic microtubule organization	biological_process
GO:0006184	obsolete GTP catabolic process	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.21	Tubulin	4	214	2.40E-69
PF03953.13	Tubulin_C	264	393	3.70E-44

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.43546
SRR5252888	dormant buds	no	dormant buds(0 month)	1.63782
SRR5252889	dormant buds	no	dormant buds(0 month)	1.94598
SRR5252886	dormant buds	no	dormant buds(1 months)	0.853549
SRR5252887	dormant buds	no	dormant buds(1 months)	0.850458
SRR5252884	dormant buds	no	dormant buds(2 months)	0.996
SRR5252882	dormant buds	no	dormant buds(3 months)	0.998934
SRR5252883	dormant buds	no	dormant buds(3 months)	0.197911
SRR5252880	dormant buds	no	dormant buds(4 months)	3.08146
SRR5252881	dormant buds	no	dormant buds(4 months)	2.91731
SRR5252878	bud break	no	bud break	4.24275
SRR5252879	bud break	no	bud break	6.20627
SRR3744766	flower	no	mature	0.359571
SRR3744767	flower	no	mature	0.264756
SRR3744768	flower	no	mature	0.282181
SRR6308190	stigmas	no	open flowers	0.434083
SRR6308181	styles	no	open flowers	0.560273
SRR6308188	filaments	no	open flowers	1.4945
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.289335
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.239643
SRR6308194	sepals	no	open flowers	0.309652
SRR6308193	receptacles	no	open flowers	2.28439
SRR6308189	ovaries	no	open flowers	1.80668
SRR3384922	fruit	no	1 week after full bloom	2.93297
SRR3384921	fruit	no	2 week after full bloom	3.91093
SRR3384920	fruit	no	3 week after full bloom	2.39029
SRR3384919	fruit	no	4 week after full bloom	2.69485
SRR3384923	fruit	no	5 week after full bloom	1.74411
SRR3384918	fruit	no	6 week after full bloom	1.42645
SRR3384917	fruit	no	8 week after full bloom	1.48736
SRR3384916	fruit	no	10 week after full bloom	1.11474
SRR3384915	fruit	no	12 week after full bloom	1.6267
SRR3384914	fruit	no	14 week after full bloom	1.19391
SRR3384913	fruit	no	16 week after full bloom	0.301334
SRR3384912	fruit	no	18 week after full bloom	0.518441
SRR3384911	fruit	no	19 week after full bloom	0.361633
SRR3384910	fruit	no	20 week after full bloom	0.566298
SRR768128	whole fruit	no	25 days post anthesis	5.1717
SRR768129	whole fruit	no	35 days post anthesis	5.84799
SRR768130	whole fruit	no	60 days post anthesis	1.9798
SRR768131	whole fruit	no	87 days post anthesis	1.27732
SRR7343308	immature fruit flesh	no	immature	2.51038
SRR7343309	immature fruit flesh	no	immature	3.2558
SRR6320494	ripe fruit flesh	no	mature	0.240641
SRR5405143	ripe fruit peel	no	mature	0.139974
SRR6320572	ripe fruit peel	no	mature	0.418342
SRR7403504	fruit	uninfected	mature	0.118079
SRR7403506	fruit	uninfected	mature	0.124733
SRR7403507	fruit	uninfected	mature	0.20734
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.0905764
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.0504832
SRR7403503	fruit	infected with penicillium expansum	mature	0.0563857
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	4.15402
SRR1613974	Central seeds	no	20DAPF	3.60448
SRR1613975	Central seeds	no	20DAPF	2.95041
SRR1613976	Lateral seeds	no	20DAPF	3.2717
SRR1613977	Lateral seeds	no	20DAPF	3.41314
SRR1613978	Lateral seeds	no	20DAPF	3.93
SRR3744786	stem	no	mature	0.467283
SRR3744787	stem	no	mature	0.404423
SRR3744772	stem	no	mature	0.518615
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.44414
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.01448
SRR1089478	leaf	Virus-free	plantlets	0.409126
SRR1089477	leaf	ASGV-infected	plantlets	1.33289
SRR767660	leaf	uninfected	fully developed	0.498096
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.50357
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.721704
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.14468
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.29748
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.754645
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.529205
SRR6308182	young leaf	no	immature leaves	6.27487
SRR3744769	leaf	no	mature	0.0995623
SRR3744770	leaf	no	mature	0.16742
SRR3744771	leaf	no	mature	0.370766
SRR5405145	leaf	no	mature	0.873296
SRR6320561	leaf	no	mature	1.07354