| Gene ID | Annotation |
|---|---|
| MD07G1159400 | transducin family protein / WD-40 repeat family protein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0586 | DnaJ homolog subfamily C member 13 regulatory region DNA binding 1-phosphatidylinositol-3-kinase activity serine/threonine-protein kinase mTOR [EC:2.7.11.1] rRNA transcription amyloplast organization nuclear-transcribed mRNA catabolic process positive regulation of cell growth positive regulation of rRNA processing positive regulation of embryonic development endosome organization negative regulation of autophagy regulator of nonsense transcripts 1 [EC:3.6.4.-] response to starvation RNA helicase activity negative gravitropism nucleus cytoplasmic mRNA processing body late endosome vegetative to reproductive phase transition of meristem protein ubiquitination involved in ubiquitin-dependent protein catabolic process zinc ion binding protein self-association endocytosis hormone-mediated signaling pathway vacuolar protein sorting-associated protein 8 trichome branching seed maturation 20S proteasome subunit beta 4 [EC:3.4.25.1] E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] E3 ubiquitin-protein ligase BRE1 [EC:2.3.2.27] |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD07G1159400 | mRNA | Chr07 | 23325302 | 23337552 | + |
| CDS: |
| MD07G1159400 |
| Protein: |
| MD07G1159400 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G00800.1 | 1 | SETH5|transducin family protein / WD-40 repeat family protein |
| Prunus persica | Prupe.2G197500.1.p | 1 | transducin family protein / WD-40 repeat family protein |
| Pyrus communis | PCP014030.1 | 1 | - |
| Pyrus x bretschneideri | Pbr007801.1 | 1 | - |
| Rosa multiflora | Rmu_sc0003333.1_g000009.1 | 1 | - |
| Rubus occidentalis | Ro07_G07872 | 1 | - |
| Fragaria vesca | mrna18626.1 | 1 | transducin family protein / WD-40 repeat family protein |
| Vitis vinifera | GSVIVT01027438001 | 1 | transducin family protein / WD-40 repeat family protein |
| Nicotiana benthamiana | Niben101Scf15824g00010.1 | 1 | Vacuolar protein sorting-associated protein 8 homolog |
| Nicotiana benthamiana | Niben101Scf04011g07006.1 | 0.813 | transducin family protein / WD-40 repeat family protein LENGTH=1913 |
| GO term | Description | Category |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0005515 | protein binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| KO | Description | Enzyme |
|---|---|---|
| K20178 | vacuolar protein sorting-associated protein 8 | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12816.3 | Vps8 | 968 | 1152 | 5.80E-55 |
 |