Gene detail

Detail information of MD07G1173000 Annotation

Gene ID	Annotation
MD07G1173000	Calcium-dependent lipid-binding (CaLB domain) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0191	OTU domain-containing protein 6 [EC:3.4.19.12] L-iditol 2-dehydrogenase [EC:1.1.1.14]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1173000	mRNA	Chr07	25055125	25059581	+

Sequences

CDS:

MD07G1173000

TGATCAGCCAAATGGCCGTTTCCTTCGAGGCAAATCAAAGAAACAAAACAAATTCAGAGTTTCAAACGTTGAAGAAGCAGAAGAAACTGTTTCAGTACCTACCCTCCCAAGTTAATTCTCAACTTCAAAAACAACCGATCGCCTTTAAATCTTATTGTAAATTAAAATTGAGTTTATTGCTCTTCTTTTTGTTCTGCGTCTTCTTGGAAGTAGCAGAGAAGAAAAATGGGAATTTTAAGCACCTTCTTTGGAATTGTCGGCTTTGGCATTGGAAGTCTGGTGGGACTCTTGGTGGGTTTCTATCTCTTCATCTATTCAGAGCCTGAGGAAGTGAAGGATCCAGTTATCAGGCCGCTGCATGAATTAGATTCTAGCACTTTGCAAGGTCTTCTACCTGAAATACCAATGTGGGTTAAATTTTCCGATTTTGAACGAGTAGACTGGCTAAACAAGTTTCTCTTGGACATTTGGCATTACCTTGACAAGGCGCTTTGTTGTACAATAAGAAACACGGCAGAACCTATCTTCGCAGAGTACATTGGGAAGTATCGCATTGAGGCAATTGAATTTGACAAGTTAAGTCTTGGAAGTCTGCCACCCATAATCTATGGTCTAAAAGTTTATGAGACTAATGAGAATGAATTAATCATAGAACCGGCATTTAGATGGGCTGGCAATCCCAACATAGTTGTGGTTTTAAATTTGTTGTCTCTAAGAATTACGGTTCAGTTAGTGGATTTGCAAGTATTTGCAGCACCACGGGTTACTCTGAAACCTCTTGTGCCGACGTTTCCATGTTTTGCAAGCATTGTCGTGTCTTTATTGGAGAAGCCACATGTTGATTTTGGAATCAAAATATTGGGTGGGGACATCATGGCCATACCAGGCCTCTATCGGTTTGTTCAGGAGACCATTAAAAACCAAGTTGCAAGCCTCTACCTATGGCCTCGAACACTGGAAATACCTGTTCTTGATGCTTCAATAGTGGCCAAGAAGCCTGTAGGGATACTTCATGTGAAGGTCGTCCGAGCACTGAAACTTTTGAAGATGGACATCTTGGGAAGTTCCGATCCTTACGTCAAACTAAACCTTACTGAAGATAAGTTGCCCGCAAAGCAAACCACTGTCAAGATGAATAAGTTGAATCCTGAGTGGAATGAGAAGTTCAGACTTATTGTGAAAGACCCCCAAACTCAAGCTCTCGAGTTGCAACTCTATGATTGGGACAAGGTTGGCAGACATGACAAATTGGGAATGCAGTTAGTTCCTCTGAAAGTGCTAACGCCCGGTGCGACAAAGGAATTTGTGCTAGATTTGGTCAAGAACACAAATATCAATGATCCTCAAAACAAGAAGCGTAGGGGGCAAGTTATAGTGGAGCTTGCTTTTGTTCCTTTCAAATCAGAAAGCAGTAAGCATAATGGAACTAGTAATGGATATGGGAAAAGCGAAAGTGGAAAGTCATTAGAGAGTGATGAGTCCCTCAGCGGAGCTGGTGTACTATCCATTTTGATCCAGGGAGCTGAGGACGTAGAAGGGGAGCATCACAGCAATCCTTATGCTTTGCTTTGCTTTAGAGGAGAAGTAAAGAAAACTAAGATGATAAGAAAATCCCGCAATCCACTTTGGAATGAAGATTTCCAATTTATGCTTGATGAGCCTCCTTTGCATGACAAGATTCGTATCGAGCTCAAGAGCAAAAGCAGAGCCCTAATCCGAGCAAAGGAATCACTAGGATACGTGGAAATTAATCTTGCCGATGTGGTACACAACGGACGCATCAATGAAAAGTTCCATTTGATTGACTCCCACAATGGAAGGATACATGCAGAGCTAAGTTGGACAAAGGCCTGAAAACTTGGGATTAGAAAACAATGCGTTGCAAGTAATCTCACGTCTCGACTGACATTTCCAATTTGTTCCGACCGATGATTACGTGATTAAATGGAAGGAAGAGAAGAGGAGAGGGAGAGAGAGTTTTGAATCTGTACATTGTTTTGATATTTCAATCGTTATAGTAAATAGGGTTTAACATTTCTGTTTTCATCCCAATAATTTTGAAGTAGATTTGGGTGGTTTTGCTTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP026775.1	1	-
Solanum lycopersicum	Solyc09g007860.2.1	1	Calcium-dependent lipid-binding (CaLB domain) family protein
Solanum lycopersicum	Solyc01g111520.2.1	1	synaptotagmin A
Oryza sativa	LOC_Os06g47130.1	1	"C2 domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17047.1	SMP_LBD	67	247	2.70E-12
PF00168.26	C2	260	358	1.90E-21
PF00168.26	C2	426	524	2.70E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.39101
SRR5252888	dormant buds	no	dormant buds(0 month)	0.236618
SRR5252889	dormant buds	no	dormant buds(0 month)	0.182739
SRR5252886	dormant buds	no	dormant buds(1 months)	0.100192
SRR5252887	dormant buds	no	dormant buds(1 months)	0.159727
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0850278
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0852782
SRR5252883	dormant buds	no	dormant buds(3 months)	0.371701
SRR5252880	dormant buds	no	dormant buds(4 months)	0.425542
SRR5252881	dormant buds	no	dormant buds(4 months)	0.5668
SRR5252878	bud break	no	bud break	0.0847704
SRR5252879	bud break	no	bud break	0.235003
SRR3744766	flower	no	mature	1.10071
SRR3744767	flower	no	mature	0.900144
SRR3744768	flower	no	mature	1.24479
SRR6308190	stigmas	no	open flowers	0.0679978
SRR6308181	styles	no	open flowers	0.292594
SRR6308188	filaments	no	open flowers	0.175563
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.725277
SRR6308192	pollen	no	open flowers	1.02989
SRR6308191	petals	no	open flowers	0.0750842
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.464261
SRR6308189	ovaries	no	open flowers	0.0943487
SRR3384922	fruit	no	1 week after full bloom	0.119748
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0.0334248
SRR3384918	fruit	no	6 week after full bloom	0.0372087
SRR3384917	fruit	no	8 week after full bloom	0.107439
SRR3384916	fruit	no	10 week after full bloom	0.10468
SRR3384915	fruit	no	12 week after full bloom	0.165141
SRR3384914	fruit	no	14 week after full bloom	0.200204
SRR3384913	fruit	no	16 week after full bloom	1.08471
SRR3384912	fruit	no	18 week after full bloom	1.01795
SRR3384911	fruit	no	19 week after full bloom	1.14613
SRR3384910	fruit	no	20 week after full bloom	1.0968
SRR768128	whole fruit	no	25 days post anthesis	0.0480945
SRR768129	whole fruit	no	35 days post anthesis	0.0528149
SRR768130	whole fruit	no	60 days post anthesis	0.177098
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.235718
SRR7343309	immature fruit flesh	no	immature	0.235148
SRR6320494	ripe fruit flesh	no	mature	8.13869
SRR5405143	ripe fruit peel	no	mature	1.70812
SRR6320572	ripe fruit peel	no	mature	0.983144
SRR7403504	fruit	uninfected	mature	5.21228
SRR7403506	fruit	uninfected	mature	4.26423
SRR7403507	fruit	uninfected	mature	5.20214
SRR7403500	fruit	infected with penicillium expansum	mature	0.745226
SRR7403501	fruit	infected with penicillium expansum	mature	1.19097
SRR7403508	fruit	infected with penicillium expansum	mature	2.02375
SRR7403502	fruit	infected with penicillium expansum	mature	1.65948
SRR7403503	fruit	infected with penicillium expansum	mature	0.741402
SRR7403505	fruit	infected with penicillium expansum	mature	1.42807
SRR1613973	Central seeds	no	20DAPF	0.477341
SRR1613974	Central seeds	no	20DAPF	0.524712
SRR1613975	Central seeds	no	20DAPF	0.389582
SRR1613976	Lateral seeds	no	20DAPF	0.280998
SRR1613977	Lateral seeds	no	20DAPF	0.468715
SRR1613978	Lateral seeds	no	20DAPF	0.426379
SRR3744786	stem	no	mature	5.49771
SRR3744787	stem	no	mature	5.07628
SRR3744772	stem	no	mature	5.35132
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.12695
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0850494
SRR1089478	leaf	Virus-free	plantlets	0.845531
SRR1089477	leaf	ASGV-infected	plantlets	0.953992
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.226103
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.59103
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.0994305
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	5.54888
SRR3744770	leaf	no	mature	5.24067
SRR3744771	leaf	no	mature	5.06084
SRR5405145	leaf	no	mature	0.410097
SRR6320561	leaf	no	mature	0