Gene detail

Detail information of MD07G1220600 Annotation

Gene ID	Annotation
MD07G1220600	high mobility group B1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1220600	mRNA	Chr07	29786627	29790176	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G51880.4	1	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Arabidopsis thaliana	AT3G51880.1	0.922	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Arabidopsis thaliana	AT3G51880.3	0.922	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
Arabidopsis thaliana	AT3G51880.2	0.899	AtHMGB1;HMGB1;NFD1\|high mobility group B1;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K10802	high mobility group protein B1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00505.15	HMG_box	66	135	4.50E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	39.3361
SRR5252888	dormant buds	no	dormant buds(0 month)	110.835
SRR5252889	dormant buds	no	dormant buds(0 month)	133.493
SRR5252886	dormant buds	no	dormant buds(1 months)	101.315
SRR5252887	dormant buds	no	dormant buds(1 months)	105.698
SRR5252884	dormant buds	no	dormant buds(2 months)	140.534
SRR5252882	dormant buds	no	dormant buds(3 months)	90.5956
SRR5252883	dormant buds	no	dormant buds(3 months)	135.55
SRR5252880	dormant buds	no	dormant buds(4 months)	116.926
SRR5252881	dormant buds	no	dormant buds(4 months)	127.807
SRR5252878	bud break	no	bud break	76.8531
SRR5252879	bud break	no	bud break	49.9312
SRR3744766	flower	no	mature	93.3129
SRR3744767	flower	no	mature	94.9303
SRR3744768	flower	no	mature	96.9501
SRR6308190	stigmas	no	open flowers	98.6139
SRR6308181	styles	no	open flowers	86.8806
SRR6308188	filaments	no	open flowers	48.2207
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	54.3053
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	47.4329
SRR6308194	sepals	no	open flowers	85.6571
SRR6308193	receptacles	no	open flowers	76.6363
SRR6308189	ovaries	no	open flowers	73.8325
SRR3384922	fruit	no	1 week after full bloom	152.392
SRR3384921	fruit	no	2 week after full bloom	150.188
SRR3384920	fruit	no	3 week after full bloom	139.673
SRR3384919	fruit	no	4 week after full bloom	135.412
SRR3384923	fruit	no	5 week after full bloom	196.544
SRR3384918	fruit	no	6 week after full bloom	211.613
SRR3384917	fruit	no	8 week after full bloom	187.231
SRR3384916	fruit	no	10 week after full bloom	134.108
SRR3384915	fruit	no	12 week after full bloom	120.086
SRR3384914	fruit	no	14 week after full bloom	140.207
SRR3384913	fruit	no	16 week after full bloom	175.448
SRR3384912	fruit	no	18 week after full bloom	124.618
SRR3384911	fruit	no	19 week after full bloom	188.119
SRR3384910	fruit	no	20 week after full bloom	119.317
SRR768128	whole fruit	no	25 days post anthesis	158.433
SRR768129	whole fruit	no	35 days post anthesis	158.578
SRR768130	whole fruit	no	60 days post anthesis	108.644
SRR768131	whole fruit	no	87 days post anthesis	138.713
SRR7343308	immature fruit flesh	no	immature	120.231
SRR7343309	immature fruit flesh	no	immature	134.894
SRR6320494	ripe fruit flesh	no	mature	123.982
SRR5405143	ripe fruit peel	no	mature	64.648
SRR6320572	ripe fruit peel	no	mature	80.119
SRR7403504	fruit	uninfected	mature	83.3341
SRR7403506	fruit	uninfected	mature	79.5043
SRR7403507	fruit	uninfected	mature	81.8888
SRR7403500	fruit	infected with penicillium expansum	mature	3.056
SRR7403501	fruit	infected with penicillium expansum	mature	2.76045
SRR7403508	fruit	infected with penicillium expansum	mature	2.27427
SRR7403502	fruit	infected with penicillium expansum	mature	4.72555
SRR7403503	fruit	infected with penicillium expansum	mature	3.06864
SRR7403505	fruit	infected with penicillium expansum	mature	4.63401
SRR1613973	Central seeds	no	20DAPF	53.3214
SRR1613974	Central seeds	no	20DAPF	58.1285
SRR1613975	Central seeds	no	20DAPF	60.1651
SRR1613976	Lateral seeds	no	20DAPF	67.8121
SRR1613977	Lateral seeds	no	20DAPF	76.6021
SRR1613978	Lateral seeds	no	20DAPF	62.044
SRR3744786	stem	no	mature	134.84
SRR3744787	stem	no	mature	143.099
SRR3744772	stem	no	mature	121.302
SRX765691	seedling shoot apex	no	4-6 week old seedling	62.7474
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	45.0812
SRR1089478	leaf	Virus-free	plantlets	39.2028
SRR1089477	leaf	ASGV-infected	plantlets	42.9306
SRR767660	leaf	uninfected	fully developed	138.073
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	40.9323
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	96.3263
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	72.0155
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	73.9179
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	130.933
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	75.4107
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	102.952
SRR6308182	young leaf	no	immature leaves	48.5548
SRR3744769	leaf	no	mature	100.422
SRR3744770	leaf	no	mature	96.8469
SRR3744771	leaf	no	mature	106.09
SRR5405145	leaf	no	mature	64.3261
SRR6320561	leaf	no	mature	112.444