Gene detail

Detail information of MD07G1222100 Annotation

Gene ID	Annotation
MD07G1222100	CRINKLY4 related 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0045	linoleate 9S-lipoxygenase [EC:1.13.11.58] Crinkly 4 Like Kinase

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1222100	mRNA	Chr07	29901654	29904086	-

Sequences

CDS:

MD07G1222100

ATGACGAAACGACCCTTCTCCTCCCTTACCACCGCCACCTTCATCATCATCACCGCCACCATCCTCTTCGCCGTTATACCACCACAAGCTCATGCCTTCGGTTCCGGCTCCACCCTTGCCGTTATCTCCGCCTCCGGCACCGTCTGCGGTGTCGTGTCAGACCAACCGCGGCAGCGCATCGTCTGCTACCGCCGCGGACAAACCGTCGCAGTCGAGCCCAACATCTCCTTCTCCGCCATCTCCGGCGGACGGACCTCTCTATGCGGCCTCCGCTCTGGCGGATACAGCATCCTCTGCTGGGACGACATCGCCTCCCAAAACTCCACCTTCCCATCCAAACGTCTTTACTTCAACAAAACCGTTACGTTAGAAAATCTCTCAGTCGGCGACGACCATATCTGCGCCAGAACCGTCGTCACAGGCACCATAAAATGCTGGCGGGTCGACGACGTGTCCGAATTACCATCTGGGTCGGACCAATTCTCCTCGATTTCATCGGGCAACTTCAATGGCGGAAGAAAATACAAAACCGGGTTCGGAAACATGACAATGGCGACCATCACAGCCGGCGGCTCGCACGTGTGCGGGATCAACACCACAGGACTTATAGTCTGCCGGGGAAGCAATGGCGCCGGCCAATGGAACGTCCCTCCTGGCTCGCCTTTCGAGTTCTCTGCTCTGTCCCTCGGAGTAAACCACAGCTGCGCAATCAGAACTTCAAATAAAACGGTCATTTGTTGGGGAGGAGGAGGTCAATTTGCATTTAACCAAACAAACGGGGTGTCTTTTGAAGTAATTGCTTCTGGGTCGGATTTCGTTTGTGGATTAACCACCAGGAATTTTTCGATTGTTTGTTGGGGTACGGGCTGGCCCAATCTCTCCGGTTTGAAATCAGGGGAGGAGCTCGAATTGCCCGAAATTCTTCCCGGTTCTTGTGTCAATTCCTCCTGCGGTGAATGTGGAATTTACCCTCAGTCCCAAAGGCTCTGTTTTGGTGCAGACAACATTTGCAAGCCCTGTTTGCCTCCAATTTCATTGCCACCACCAGCATTTCCACCGCCGCCGCCGTCGCCGCAGCCGCCACCGCCCCTGCCGTCAAGGCTGCCGCCCGCGGCATTGACGACGGGTTTATTGATGTTTGCCATTGTCGGTTCTGTCGGAGCTTTTGCAGTTCAGCCGACAATTACTAGAGATGCTAGCTCAAACAATGGCAATGGGATAACGTCAAACAATAGTCCCCCGTCGAGATCCTCCACCATCCGCCGCCAGGGCTCGAGGATCATGAGGCGGCAGAGGAGCGGAACATCCTCGAAGCATGCAGACAGGGCGGAGGAGTTTTCCCTGTCCGAGCTCGCGGCCGCCACCAATGACTTCTCAATGGAGAACAAGATTGGCGCCGGAAGCTTCGGAGTTGTATATAGAGGCAAACTGCCTGACGGCCGGGAAGTTGCGATCAAGAGAGGCGAAACCGCCCCGAAGATGAAGAAGTATCAGGAGAAGGAGAGCGCATTCGATTCGGAACTTGCGTTCTTGTCGAGAGTTCATCACAAACATCTCGTGAGGCTTGTCGGATATTGCCAAGAGAGGGACGAGAGGCTTTTGGTGTACGAGCACGTGAAAAACGGTGCGCTTTATGATCACTTGCATGACAAGAACAATGTGGAGAGAAGCAGTAGTTTGTTAAATTCGTGGAAAATGAGGATCAAGGTTGCATTGGATGCCTCCAGAGGCATTGAGTATCTGCACAATTACGCCGTGCCGCCTATCATTCATCGAGATATAAAGTCATCGAACATCTTGCTCGACGCGAATTGGACCGCGAGGGTGTCTGATTTTGGGTTGTCGTTGATGGGGCCGGAGTCAGAGGTGGATTTTAGGCCAACGAAGGCGGCAGGGACGGTTGGCTACATTGATCCGGAGTACTACGGACTCAACTTGTTGACCGCGAAGAGCGATGTCTATGGACTCGGCGTGGTGCTACTGGAGCTTCTGACGGGGAAGAGGGCAATATTTAAGGATGGTGAGGATGGGGGGACGCCCATAAGCGTGGTGGATTTCGCAGTGCCGGCGATTATGAAAGGGGAGTTGGTGAGGGTTTTGGACAAGAGGGTTGGGCCTCCGGAAGTGAATGAATCGGAGGCGGTTGAGCTGGTGGCGTATACAGCAATGCATTGTGTGAGTTTGGAAGGGAAAGATAGGCCGACGATGGCGGACATTGTGGCGAACTTGGAGAGGGCGTATGCCCTGTGCGATGAAAGCCCTGGCAGCATCTCAAGTGGTGCAATCTCCATTGTCTCAGCAGAGTAA

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.4.1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP013207.1	1	-
Pyrus x bretschneideri	Pbr010905.1	1	-
Rubus occidentalis	Ro07_G26819	1	-
Oryza sativa	LOC_Os05g03620.1	1	"TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed"
Zea mays	GRMZM2G120839_P01	1	Putative CRINKLY4-like receptor protein kinase family protein
Zea mays	GRMZM2G076868_P01	0.745	Putative CRINKLY4-like receptor protein kinase family protein

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	459	740	6.00E-42

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.104845
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.538689
SRR3744767	flower	no	mature	0.4569
SRR3744768	flower	no	mature	0.735078
SRR6308190	stigmas	no	open flowers	0.121743
SRR6308181	styles	no	open flowers	0.366791
SRR6308188	filaments	no	open flowers	0.157136
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.81885
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.739454
SRR6308194	sepals	no	open flowers	0.58629
SRR6308193	receptacles	no	open flowers	0.207826
SRR6308189	ovaries	no	open flowers	0.211195
SRR3384922	fruit	no	1 week after full bloom	0.142725
SRR3384921	fruit	no	2 week after full bloom	0.231736
SRR3384920	fruit	no	3 week after full bloom	0.476111
SRR3384919	fruit	no	4 week after full bloom	0.345602
SRR3384923	fruit	no	5 week after full bloom	0.388422
SRR3384918	fruit	no	6 week after full bloom	0.598698
SRR3384917	fruit	no	8 week after full bloom	0.384163
SRR3384916	fruit	no	10 week after full bloom	0.655015
SRR3384915	fruit	no	12 week after full bloom	0.442861
SRR3384914	fruit	no	14 week after full bloom	0.53689
SRR3384913	fruit	no	16 week after full bloom	1.13826
SRR3384912	fruit	no	18 week after full bloom	1.14732
SRR3384911	fruit	no	19 week after full bloom	0.986582
SRR3384910	fruit	no	20 week after full bloom	0.564495
SRR768128	whole fruit	no	25 days post anthesis	0.215035
SRR768129	whole fruit	no	35 days post anthesis	0.47228
SRR768130	whole fruit	no	60 days post anthesis	1.10855
SRR768131	whole fruit	no	87 days post anthesis	1.43043
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.210151
SRR6320494	ripe fruit flesh	no	mature	0.606708
SRR5405143	ripe fruit peel	no	mature	0.117382
SRR6320572	ripe fruit peel	no	mature	0.352139
SRR7403504	fruit	uninfected	mature	0.0396634
SRR7403506	fruit	uninfected	mature	0.0209493
SRR7403507	fruit	uninfected	mature	0.0248738
SRR7403500	fruit	infected with penicillium expansum	mature	5.89445
SRR7403501	fruit	infected with penicillium expansum	mature	5.85684
SRR7403508	fruit	infected with penicillium expansum	mature	6.41547
SRR7403502	fruit	infected with penicillium expansum	mature	4.36658
SRR7403503	fruit	infected with penicillium expansum	mature	5.82413
SRR7403505	fruit	infected with penicillium expansum	mature	5.02238
SRR1613973	Central seeds	no	20DAPF	0.0106738
SRR1613974	Central seeds	no	20DAPF	0.0293326
SRR1613975	Central seeds	no	20DAPF	0.0398236
SRR1613976	Lateral seeds	no	20DAPF	0.0314169
SRR1613977	Lateral seeds	no	20DAPF	0.054683
SRR1613978	Lateral seeds	no	20DAPF	0.0651118
SRR3744786	stem	no	mature	0.0977991
SRR3744787	stem	no	mature	0.0806003
SRR3744772	stem	no	mature	0.0964685
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0497334
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0276779
SRR1089478	leaf	Virus-free	plantlets	0.0687527
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.0872882
SRR3744769	leaf	no	mature	0.0833898
SRR3744770	leaf	no	mature	0.0700418
SRR3744771	leaf	no	mature	0.0689127
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0