Gene detail

Detail information of MD07G1234700 Annotation

Gene ID	Annotation
MD07G1234700	WRKY DNA-binding protein 70

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0625	tropinone reductase I [EC:1.1.1.206]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1234700	mRNA	Chr07	30816225	30818950	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	WRKY

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G56400.1	1	ATWRKY70;WRKY70\|ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70;WRKY DNA-binding protein 70
Pyrus communis	PCP021133.1	1	-
Pyrus x bretschneideri	Pbr002913.1	1	-
Rubus occidentalis	Ro07_G04678	1	-
Fragaria vesca	mrna21365.1	1	WRKY DNA-binding protein 70
Vitis vinifera	GSVIVT01032661001	1	WRKY DNA-binding protein 70
Solanum lycopersicum	Solyc03g095770.2.1	1	WRKY DNA-binding protein 70
Solanum lycopersicum	Solyc09g015770.2.1	1	WRKY DNA-binding protein 70
Populus trichocarpa	Potri.013G090300.1	1	WRKY DNA-binding protein 70
Oryza sativa	LOC_Os05g25770.1	1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc fingerdomains, expressed"

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	molecular_function
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.11	WRKY	127	186	2.30E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.58305
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.573228
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.25052
SRR5252884	dormant buds	no	dormant buds(2 months)	0.13336
SRR5252882	dormant buds	no	dormant buds(3 months)	0.401259
SRR5252883	dormant buds	no	dormant buds(3 months)	1.96758
SRR5252880	dormant buds	no	dormant buds(4 months)	0.266973
SRR5252881	dormant buds	no	dormant buds(4 months)	0.444493
SRR5252878	bud break	no	bud break	1.32957
SRR5252879	bud break	no	bud break	5.67622
SRR3744766	flower	no	mature	12.306
SRR3744767	flower	no	mature	12.1808
SRR3744768	flower	no	mature	14.079
SRR6308190	stigmas	no	open flowers	1.58759
SRR6308181	styles	no	open flowers	8.36904
SRR6308188	filaments	no	open flowers	3.82934
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.140944
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	8.87658
SRR6308194	sepals	no	open flowers	11.3204
SRR6308193	receptacles	no	open flowers	15.2566
SRR6308189	ovaries	no	open flowers	68.0668
SRR3384922	fruit	no	1 week after full bloom	7.32551
SRR3384921	fruit	no	2 week after full bloom	38.2916
SRR3384920	fruit	no	3 week after full bloom	7.22068
SRR3384919	fruit	no	4 week after full bloom	10.089
SRR3384923	fruit	no	5 week after full bloom	7.13035
SRR3384918	fruit	no	6 week after full bloom	3.91041
SRR3384917	fruit	no	8 week after full bloom	0.589842
SRR3384916	fruit	no	10 week after full bloom	0.547324
SRR3384915	fruit	no	12 week after full bloom	0.129518
SRR3384914	fruit	no	14 week after full bloom	0.439647
SRR3384913	fruit	no	16 week after full bloom	0.295903
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.133169
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	4.1414
SRR768129	whole fruit	no	35 days post anthesis	13.2302
SRR768130	whole fruit	no	60 days post anthesis	0.831812
SRR768131	whole fruit	no	87 days post anthesis	0.313056
SRR7343308	immature fruit flesh	no	immature	5.55015
SRR7343309	immature fruit flesh	no	immature	15.8803
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	1.97554
SRR7403501	fruit	infected with penicillium expansum	mature	1.06606
SRR7403508	fruit	infected with penicillium expansum	mature	1.82522
SRR7403502	fruit	infected with penicillium expansum	mature	1.26262
SRR7403503	fruit	infected with penicillium expansum	mature	1.4932
SRR7403505	fruit	infected with penicillium expansum	mature	1.71504
SRR1613973	Central seeds	no	20DAPF	0.559773
SRR1613974	Central seeds	no	20DAPF	0.602504
SRR1613975	Central seeds	no	20DAPF	0.783185
SRR1613976	Lateral seeds	no	20DAPF	1.18079
SRR1613977	Lateral seeds	no	20DAPF	1.03028
SRR1613978	Lateral seeds	no	20DAPF	0.943108
SRR3744786	stem	no	mature	54.9829
SRR3744787	stem	no	mature	51.8628
SRR3744772	stem	no	mature	51.9261
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.78073
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.3298
SRR1089478	leaf	Virus-free	plantlets	20.5512
SRR1089477	leaf	ASGV-infected	plantlets	42.5103
SRR767660	leaf	uninfected	fully developed	2.19385
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.59469
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.4709
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	29.9169
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	114.322
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	183.133
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	117.262
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	81.9024
SRR6308182	young leaf	no	immature leaves	11.4471
SRR3744769	leaf	no	mature	16.5627
SRR3744770	leaf	no	mature	18.0197
SRR3744771	leaf	no	mature	18.1244
SRR5405145	leaf	no	mature	109.641
SRR6320561	leaf	no	mature	120.181