Gene detail

Detail information of MD07G1267700 Annotation

Gene ID	Annotation
MD07G1267700	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0634	isopentenyl diphosphate biosynthetic process large subunit ribosomal protein L34 E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] heme oxygenase (decyclizing) activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity phytochromobilin biosynthetic process heme oxidation regulation of protein homodimerization activity steroid biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1267700	mRNA	Chr07	33550835	33552049	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G293400.1.p	1	Transducin/WD40 repeat-like superfamily protein
Pyrus communis	PCP002902.1	1	-
Pyrus x bretschneideri	Pbr013965.1	1	-
Rosa multiflora	Rmu_ssc0000155.1_g000016.1	1	-
Rubus occidentalis	Ro07_G09448	1	-
Solanum lycopersicum	Solyc11g005190.1.1	1	Transducin/WD40 repeat-like superfamily protein
Populus trichocarpa	Potri.015G143200.1	1	Transducin/WD40 repeat-like superfamily protein
Nicotiana benthamiana	Niben101Scf05668g01001.1	1	nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gb\|EFH48330.1\| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]
Oryza sativa	LOC_Os02g02380.1	1	"suppressor of phythchrome A, putative"
Zea mays	GRMZM2G389155_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K10143	E3 ubiquitin-protein ligase RFWD2	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.73207
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.0878602
SRR3744766	flower	no	mature	0.20188
SRR3744767	flower	no	mature	0.0884982
SRR3744768	flower	no	mature	0.178737
SRR6308190	stigmas	no	open flowers	0.125639
SRR6308181	styles	no	open flowers	0.431653
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.138603
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.348081
SRR3384922	fruit	no	1 week after full bloom	0.597015
SRR3384921	fruit	no	2 week after full bloom	0.323116
SRR3384920	fruit	no	3 week after full bloom	0.213382
SRR3384919	fruit	no	4 week after full bloom	0.131422
SRR3384923	fruit	no	5 week after full bloom	0.312454
SRR3384918	fruit	no	6 week after full bloom	0.13913
SRR3384917	fruit	no	8 week after full bloom	0.401736
SRR3384916	fruit	no	10 week after full bloom	0.195708
SRR3384915	fruit	no	12 week after full bloom	0.154373
SRR3384914	fruit	no	14 week after full bloom	0.67374
SRR3384913	fruit	no	16 week after full bloom	0.440863
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0793625
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.537959
SRR768129	whole fruit	no	35 days post anthesis	0.196919
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0222026
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0.0207093
SRR1613976	Lateral seeds	no	20DAPF	0.0326752
SRR1613977	Lateral seeds	no	20DAPF	0.0505539
SRR1613978	Lateral seeds	no	20DAPF	0.0773939
SRR3744786	stem	no	mature	0.0692419
SRR3744787	stem	no	mature	0.171343
SRR3744772	stem	no	mature	0.0341781
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.380349
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.300704
SRR1089478	leaf	Virus-free	plantlets	0.143003
SRR1089477	leaf	ASGV-infected	plantlets	0.221852
SRR767660	leaf	uninfected	fully developed	1.73985
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.92479
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.188227
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.218582
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.554675
SRR6308182	young leaf	no	immature leaves	0.269851
SRR3744769	leaf	no	mature	0.141313
SRR3744770	leaf	no	mature	0.298473
SRR3744771	leaf	no	mature	0.294318
SRR5405145	leaf	no	mature	0.255063
SRR6320561	leaf	no	mature	2.24295