Gene detail

Detail information of MD08G1010500 Annotation

Gene ID	Annotation
MD08G1010500	TFIIB zinc-binding protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1010500	mRNA	Chr08	774300	776131	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G25940.1	1	TFIIB zinc-binding protein
Prunus persica	Prupe.6G147400.1.p	1	TFIIB zinc-binding protein
Pyrus communis	PCP031987.1	1	-
Pyrus communis	PCP025792.1	0.707	-
Pyrus x bretschneideri	Pbr005816.1	1	-
Rosa multiflora	Rmu_sc0002933.1_g000004.1	1	-
Rosa multiflora	Rmu_sc0008812.1_g000011.1	0.936	-
Rubus occidentalis	Ro02_G02224	1	-
Vitis vinifera	GSVIVT01009945001	1	TFIIB zinc-binding protein
Solanum lycopersicum	Solyc04g054510.2.1	1	TFIIB zinc-binding protein
Populus trichocarpa	Potri.013G015000.1	1	TFIIB zinc-binding protein
Nicotiana benthamiana	Niben101Scf06890g01020.1	1	DNA-directed RNA polymerase I subunit RPA12
Nicotiana benthamiana	Niben101Scf00837g12028.1	0.946	DNA-directed RNA polymerase I subunit RPA12
Oryza sativa	LOC_Os03g50380.1	1	"DNA-directed RNA polymerase I subunit RPA12, putative, expressed"
Zea mays	GRMZM5G800853_P01	1	TFIIB zinc-binding protein

Gene Ontology

GO term	Description	Category
GO:0003676	nucleic acid binding	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K03000	DNA-directed RNA polymerase I subunit RPA12	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01096.14	TFIIS_C	78	115	1.80E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	11.4662
SRR5252888	dormant buds	no	dormant buds(0 month)	22.0971
SRR5252889	dormant buds	no	dormant buds(0 month)	14.887
SRR5252886	dormant buds	no	dormant buds(1 months)	14.7318
SRR5252887	dormant buds	no	dormant buds(1 months)	14.1759
SRR5252884	dormant buds	no	dormant buds(2 months)	19.5979
SRR5252882	dormant buds	no	dormant buds(3 months)	20.6723
SRR5252883	dormant buds	no	dormant buds(3 months)	20.1257
SRR5252880	dormant buds	no	dormant buds(4 months)	28.0718
SRR5252881	dormant buds	no	dormant buds(4 months)	21.9611
SRR5252878	bud break	no	bud break	18.8648
SRR5252879	bud break	no	bud break	22.0397
SRR3744766	flower	no	mature	3.62629
SRR3744767	flower	no	mature	3.92223
SRR3744768	flower	no	mature	4.03561
SRR6308190	stigmas	no	open flowers	2.33827
SRR6308181	styles	no	open flowers	2.22139
SRR6308188	filaments	no	open flowers	5.39227
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.72153
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.86181
SRR6308194	sepals	no	open flowers	4.16038
SRR6308193	receptacles	no	open flowers	7.51662
SRR6308189	ovaries	no	open flowers	4.12297
SRR3384922	fruit	no	1 week after full bloom	17.7741
SRR3384921	fruit	no	2 week after full bloom	14.0859
SRR3384920	fruit	no	3 week after full bloom	11.9491
SRR3384919	fruit	no	4 week after full bloom	9.7816
SRR3384923	fruit	no	5 week after full bloom	8.77067
SRR3384918	fruit	no	6 week after full bloom	10.2074
SRR3384917	fruit	no	8 week after full bloom	8.3295
SRR3384916	fruit	no	10 week after full bloom	6.65889
SRR3384915	fruit	no	12 week after full bloom	11.3257
SRR3384914	fruit	no	14 week after full bloom	8.75559
SRR3384913	fruit	no	16 week after full bloom	5.62507
SRR3384912	fruit	no	18 week after full bloom	7.56633
SRR3384911	fruit	no	19 week after full bloom	7.08823
SRR3384910	fruit	no	20 week after full bloom	3.17137
SRR768128	whole fruit	no	25 days post anthesis	6.81669
SRR768129	whole fruit	no	35 days post anthesis	9.98098
SRR768130	whole fruit	no	60 days post anthesis	7.66978
SRR768131	whole fruit	no	87 days post anthesis	3.67379
SRR7343308	immature fruit flesh	no	immature	6.58522
SRR7343309	immature fruit flesh	no	immature	10.3518
SRR6320494	ripe fruit flesh	no	mature	3.52365
SRR5405143	ripe fruit peel	no	mature	2.65738
SRR6320572	ripe fruit peel	no	mature	1.49173
SRR7403504	fruit	uninfected	mature	3.59015
SRR7403506	fruit	uninfected	mature	3.14498
SRR7403507	fruit	uninfected	mature	3.07516
SRR7403500	fruit	infected with penicillium expansum	mature	2.9421
SRR7403501	fruit	infected with penicillium expansum	mature	5.0377
SRR7403508	fruit	infected with penicillium expansum	mature	3.63164
SRR7403502	fruit	infected with penicillium expansum	mature	5.05401
SRR7403503	fruit	infected with penicillium expansum	mature	2.927
SRR7403505	fruit	infected with penicillium expansum	mature	3.7586
SRR1613973	Central seeds	no	20DAPF	15.0266
SRR1613974	Central seeds	no	20DAPF	13.7862
SRR1613975	Central seeds	no	20DAPF	14.2335
SRR1613976	Lateral seeds	no	20DAPF	16.8948
SRR1613977	Lateral seeds	no	20DAPF	15.0618
SRR1613978	Lateral seeds	no	20DAPF	14.8436
SRR3744786	stem	no	mature	6.09428
SRR3744787	stem	no	mature	6.11943
SRR3744772	stem	no	mature	5.50008
SRX765691	seedling shoot apex	no	4-6 week old seedling	10.0232
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.6583
SRR1089478	leaf	Virus-free	plantlets	0.901582
SRR1089477	leaf	ASGV-infected	plantlets	1.3987
SRR767660	leaf	uninfected	fully developed	5.47518
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	28.0261
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.96968
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.86432
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.48297
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.26417
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.2692
SRR6308182	young leaf	no	immature leaves	17.6174
SRR3744769	leaf	no	mature	6.2582
SRR3744770	leaf	no	mature	4.63022
SRR3744771	leaf	no	mature	5.40878
SRR5405145	leaf	no	mature	4.85824
SRR6320561	leaf	no	mature	2.3342