| Gene ID | Annotation |
|---|---|
| MD08G1017300 | LSD1-like 3 |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| -- | -- | -- |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD08G1017300 | mRNA | Chr08 | 1319733 | 1328087 | + |
| CDS: |
| MD08G1017300 |
| Protein: |
| MD08G1017300 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-SWI3 |
| Epigenetic Regulators | HDMA |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G16310.1 | 1 | LDL3|LSD1-like 3 |
| Prunus persica | Prupe.1G370000.3.p | 1 | LSD1-like 3 |
| Prunus persica | Prupe.1G370000.2.p | 1 | LSD1-like 3 |
| Prunus persica | Prupe.1G370000.4.p | 1 | LSD1-like 3 |
| Prunus persica | Prupe.1G370000.1.p | 1 | LSD1-like 3 |
| Pyrus communis | PCP008545.1 | 1 | - |
| Pyrus x bretschneideri | Pbr028093.1 | 1 | - |
| Rosa multiflora | Rmu_sc0003633.1_g000002.1 | 1 | - |
| Rubus occidentalis | Ro02_G02283 | 1 | - |
| Fragaria vesca | mrna15221.1 | 1 | LSD1-like 3 |
| Vitis vinifera | GSVIVT01009834001 | 1 | LSD1-like 3 |
| Solanum lycopersicum | Solyc04g081100.2.1 | 1 | LSD1-like 3 |
| Populus trichocarpa | Potri.002G027100.1 | 1 | LSD1-like 3 |
| Nicotiana benthamiana | Niben101Scf01205g03001.1 | 1 | Lysine-specific histone demethylase 1 homolog 3 |
| Oryza sativa | LOC_Os10g38850.1 | 1 | "amine oxidase, putative, expressed" |
| Zea mays | GRMZM2G030529_P01 | 1 | LSD1-like 3 |
| GO term | Description | Category |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0005634 | nucleus | cellular component |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005515 | protein binding | molecular_function |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04433.13 | SWIRM | 577 | 664 | 3.40E-15 |
| PF01593.20 | Amino_oxidase | 843 | 1319 | 3.60E-98 |
 |