Gene detail

Detail information of MD08G1031200 Annotation

Gene ID	Annotation
MD08G1031200	RAD-like 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1031200	mRNA	Chr08	2224083	2225703	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB-related

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G378800.1.p	1	RAD-like 6
Pyrus x bretschneideri	Pbr006147.1	1	-
Fragaria vesca	mrna15150.1	1	RAD-like 6
Vitis vinifera	GSVIVT01009716001	1	RAD-like 6
Populus trichocarpa	Potri.002G260000.1	1	RAD-like 6
Nicotiana benthamiana	Niben101Scf02594g00002.1	1	Transcription factor RADIALIS
Oryza sativa	LOC_Os05g50350.1	1	"MYB family transcription factor, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.27	Myb_DNA-binding	5	52	3.60E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.02326
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.392261
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.685725
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.36611
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.605337
SRR3744766	flower	no	mature	1.04482
SRR3744767	flower	no	mature	1.13722
SRR3744768	flower	no	mature	0.51346
SRR6308190	stigmas	no	open flowers	0.559039
SRR6308181	styles	no	open flowers	2.38833
SRR6308188	filaments	no	open flowers	0.72553
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.475555
SRR6308189	ovaries	no	open flowers	2.31301
SRR3384922	fruit	no	1 week after full bloom	3.60049
SRR3384921	fruit	no	2 week after full bloom	4.63965
SRR3384920	fruit	no	3 week after full bloom	0.98047
SRR3384919	fruit	no	4 week after full bloom	0.452905
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.63929
SRR3384917	fruit	no	8 week after full bloom	1.38446
SRR3384916	fruit	no	10 week after full bloom	0.149877
SRR3384915	fruit	no	12 week after full bloom	1.064
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.190104
SRR3384911	fruit	no	19 week after full bloom	0.364664
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.02179
SRR768129	whole fruit	no	35 days post anthesis	8.07895
SRR768130	whole fruit	no	60 days post anthesis	4.13879
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	1.01676
SRR7343309	immature fruit flesh	no	immature	1.01742
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.608646
SRR1613973	Central seeds	no	20DAPF	8.25386
SRR1613974	Central seeds	no	20DAPF	11.03
SRR1613975	Central seeds	no	20DAPF	13.5666
SRR1613976	Lateral seeds	no	20DAPF	10.2954
SRR1613977	Lateral seeds	no	20DAPF	7.42
SRR1613978	Lateral seeds	no	20DAPF	9.21033
SRR3744786	stem	no	mature	0.16547
SRR3744787	stem	no	mature	0.0820737
SRR3744772	stem	no	mature	0.0818512
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.129439
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0320563
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.232478
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.251496
SRR3744770	leaf	no	mature	0.0899007
SRR3744771	leaf	no	mature	0.267535
SRR5405145	leaf	no	mature	0.582767
SRR6320561	leaf	no	mature	0