Gene detail

Detail information of MD08G1031900 Annotation

Gene ID	Annotation
MD08G1031900	flavodoxin family protein / radical SAM domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1031900	mRNA	Chr08	2281426	2285319	+

Sequences

CDS:

MD08G1031900

CCATGCTATAATAAGGTTTTCTTAGTTGTTTTCGGTTGCCTCCACTAGAAGAAATTTCTGGCTCCGTAGGGTGAATGAGAAAGGGATTTGAACCCAGATGCATAAGAGGGAGAACATTCGCTCTAGTCGATGTGGCTATGTCTACGTCTGCAAATTGTTAATCATTGAACTCAAATAGTTTGGGCCGACTATGACTCCAATATGAATTCAGCCCACCAACACTGCGTACCCAAATTCCGGACGCCGTCTTCTGCCTCCCCTGTCACTCTTCGCGGCTCTGCTACGAACTCCATGTTCTTCGCGCCTCCACAACGCTCATCGGCTCATGTGATTTTCCGCAAAAGGGCAATCCCAGAACTTTAATTTCCCGCCATGTCCTTCTCCTCCACCCCTGCGCGGCTCACTCTCCTCGCCCTCCTCTCCGCCACCACGGTCTACTGCTTCTACAAATCCCGCCGCCTCCGACGCCTCAAGCTCTCCCTAAACCCTAACTCTAGCTCCTCGCCTCGCAGAGGCAAGCTCTTCTTCGTCTCCCAAACCGGCACCTCCGAAGCTCTAGCTCGTCGCCTGCTCGATGTTCTGACGTCGAACGGCGTCGCTTTCGACCTCGTGGACCCCAGCAACTACGAGCCCGAGGACCTGCCGAAGGAAACCCTAGTTCTGATCGTCGCTTCGACGTGGGATGACGGGAAGCCGCCTCCGAACGCCAGATTCTTCTCCAATTGGCTCGCCGAGAGCGCGGAGGACTTCAGGGTGGGATCGCTGTTGCTCTCCAATTGCAAATTCGCCGTCTTCGGCGTCGGGAGCCGAGCCTATGGCGCTACGTTCAATGCGGTGGGGAAGGACTTGGCTAGGAGGATGAGGGCGTTGGGCGCTTCTGAGATGTTTCCGATTTGGGAAAGTGACGTGGACGGTGGTGATTTGGACGAGGTGTTTGATGCTTGGAGTGGGAAGGTGGTGAGGTTTCTGAAGGGTGGTGCGGCGGAAAATGGCGGGGTTTTGGGTAATGGGGTTGGCGATGAATGTGAAGCTGAGAGCTTTGATGGGTCAGACGAGGACGAGGAGGACGAGGAGGAGGATGGTGAGGAGTCAGGGGTTGTTGACCTTGAGGATATTGCAGGTAAAGGACCTTCAAGAAGGAATCCAGTGGCGGTGACGAAGACTAATGGGACAGTGAATGGTAAAAAAGAGATGGTCACTCCGGTGATTCGGGCTAGCTTAACGAAGCAGGGGTATAAAATCATTGGTTCACATAGTGGTGTCAAAATTTGTAGATGGACAAAGTCGCAGCTCCGAGGCCGTGGAGGTTGCTACAAGCACTCGTTTTATGGTATAGAAAGTCACAGGTGCATGGAGACAACCCCTAGTTTGGCATGTGCCAACAAATGTGTATTTTGTTGGAGACATCACACAAATCCTGTCGGAAAGAGTTGGCAGTGGAAGATGGATGATCCGTTAGAAATTGTTAACTCTGCCATAGACCAGCACACAAAAATGATCAAGCAAATGAAAGGAGTTCCTGGTGTTACATTGGAGCGATTAACAGAGGGTCTCTCTCCCAGGCATTGCGCCTTATCTCTTGTTGGTGAACCTATCATGTATCCTGAGATTAATTCACTCCTAGATGAGCTGCATCGAAGGCGGATTTCTACTTTTCTAGTCACAAATGCTCAGTTTCCTGAAAAGATCAAAATGCTGAACCCCATTACGCAGTTATATGTAAGTGTGGATGCTGCTACTAAAGAAAGTTTGAAGGCAATTGACAGGCCACTTTTTGGGGATTTTTGGGAGCGATTCATTGATTCCTTGACTTCTCTCAAGGATAAACAGCAACGAACTGTTTATCGCCTTACTCTGGTGAAAGGCTGGAATACAGAAGATATTGATGCTTATTATAACATTTTTAGCCTTGGTAGTCCTGATTTTGTTGAAATCAAGGGAGTTACATACTGTGGAACGTCTGCTACATCAAAGTTGACAATGGAGAATGTGCCCTGGCATGCCGATGTTAAAACATTTTCAGAGGCCTTAGCTTTGAAAAGTAACGGGGAGTATGAGGTTGCATGTGAGCATGTCCACTCTTGTTGTGTCCTCCTGGCTAAAACTAGCAAGTTCAAGATCAATGGCCAGTGGTTCACATGGATTGACTATGAAAAGTTTCACGATCTGGTGGCTTCTGGAAAACCTTTTGACAGTAAGGATTACATGGCTCCAACACCTTCATGGGCCGTGTATGGGGCAGATGAAGGTGGATTTGATCCGTACCAGTCTCGATACAAGAAAGAGCGCCATCACAGACCAAACCAGTGACTACCAGGTTAGGGGTTTGATTACTGTCATGTTCTAGGAACAGTTTTGATTGTATTTTATTGTAGTTTTACGTACGTGAAACAGTATTTTCACAACATAACTGCAGTCTATAGATTAGAGAGAGAATTACTGTTTATGTTCCGATACATTATTATCCTTTAGTAATTCTCTGCTTCGTTGTTTCTGGGAAAGTTTTACTCTGCAATGTTTATGTTTCAATAACGTCGTAAATATGAAGCTACTGTTAATTAGGGAGAGAATTACAGTTTATGTTCCGATTCATTCAAATCGATTCAAAAGGTTCTGGCTACTTGATGTCTTTTGTGTTCTTAGCTCTTGGGACTTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G75200.1	1	flavodoxin family protein / radical SAM domain-containing protein
Prunus persica	Prupe.1G379500.2.p	1	flavodoxin family protein / radical SAM domain-containing protein
Prunus persica	Prupe.1G379500.1.p	1	flavodoxin family protein / radical SAM domain-containing protein
Pyrus communis	PCP024520.1	1	-
Pyrus x bretschneideri	Pbr006154.1	1	-
Rubus occidentalis	Ro02_G34822	1	-
Fragaria vesca	mrna15142.1	1	flavodoxin family protein / radical SAM domain-containing protein
Vitis vinifera	GSVIVT01009707001	1	flavodoxin family protein / radical SAM domain-containing protein
Solanum lycopersicum	Solyc04g080340.2.1	1	flavodoxin family protein / radical SAM domain-containing protein
Populus trichocarpa	Potri.002G260700.1	1	flavodoxin family protein / radical SAM domain-containing protein
Nicotiana benthamiana	Niben101Scf08160g05013.1	1	Sulfite reductase [NADPH] flavoprotein alpha-component
Oryza sativa	LOC_Os03g56390.1	1	"tRNA wybutosine-synthesizing protein 1, putative, expressed"
Zea mays	GRMZM2G068028_P01	1	flavodoxin family protein / radical SAM domain-containing protein

Gene Ontology

GO term	Description	Category
GO:0016491	oxidoreductase activity	molecular_function
GO:0010181	FMN binding	molecular_function
GO:0005506	iron ion binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0051536	iron-sulfur cluster binding	molecular_function

KEGG

KO	Description	Enzyme
K15449	tRNA wybutosine-synthesizing protein 1	EC:4.1.3.44

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00258.21	Flavodoxin_1	50	191	5.60E-28
PF04055.17	Radical_SAM	330	509	2.60E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.79494
SRR5252888	dormant buds	no	dormant buds(0 month)	10.2426
SRR5252889	dormant buds	no	dormant buds(0 month)	9.59042
SRR5252886	dormant buds	no	dormant buds(1 months)	10.2094
SRR5252887	dormant buds	no	dormant buds(1 months)	10.5242
SRR5252884	dormant buds	no	dormant buds(2 months)	11.8562
SRR5252882	dormant buds	no	dormant buds(3 months)	11.8912
SRR5252883	dormant buds	no	dormant buds(3 months)	10.8572
SRR5252880	dormant buds	no	dormant buds(4 months)	13.1716
SRR5252881	dormant buds	no	dormant buds(4 months)	12.0144
SRR5252878	bud break	no	bud break	8.05343
SRR5252879	bud break	no	bud break	8.93038
SRR3744766	flower	no	mature	6.00357
SRR3744767	flower	no	mature	6.2267
SRR3744768	flower	no	mature	6.79966
SRR6308190	stigmas	no	open flowers	4.18091
SRR6308181	styles	no	open flowers	4.99502
SRR6308188	filaments	no	open flowers	4.45103
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.64911
SRR6308192	pollen	no	open flowers	1.18645
SRR6308191	petals	no	open flowers	4.67553
SRR6308194	sepals	no	open flowers	5.3138
SRR6308193	receptacles	no	open flowers	6.95966
SRR6308189	ovaries	no	open flowers	5.69491
SRR3384922	fruit	no	1 week after full bloom	6.11614
SRR3384921	fruit	no	2 week after full bloom	4.07151
SRR3384920	fruit	no	3 week after full bloom	4.02224
SRR3384919	fruit	no	4 week after full bloom	3.41975
SRR3384923	fruit	no	5 week after full bloom	3.22655
SRR3384918	fruit	no	6 week after full bloom	3.47779
SRR3384917	fruit	no	8 week after full bloom	3.04554
SRR3384916	fruit	no	10 week after full bloom	3.76928
SRR3384915	fruit	no	12 week after full bloom	4.20674
SRR3384914	fruit	no	14 week after full bloom	3.7425
SRR3384913	fruit	no	16 week after full bloom	3.14344
SRR3384912	fruit	no	18 week after full bloom	5.08613
SRR3384911	fruit	no	19 week after full bloom	3.21961
SRR3384910	fruit	no	20 week after full bloom	4.88895
SRR768128	whole fruit	no	25 days post anthesis	5.30997
SRR768129	whole fruit	no	35 days post anthesis	5.10225
SRR768130	whole fruit	no	60 days post anthesis	4.07352
SRR768131	whole fruit	no	87 days post anthesis	4.49706
SRR7343308	immature fruit flesh	no	immature	6.31874
SRR7343309	immature fruit flesh	no	immature	6.30209
SRR6320494	ripe fruit flesh	no	mature	7.28609
SRR5405143	ripe fruit peel	no	mature	7.84128
SRR6320572	ripe fruit peel	no	mature	12.3995
SRR7403504	fruit	uninfected	mature	6.22273
SRR7403506	fruit	uninfected	mature	6.6632
SRR7403507	fruit	uninfected	mature	6.65327
SRR7403500	fruit	infected with penicillium expansum	mature	4.78973
SRR7403501	fruit	infected with penicillium expansum	mature	4.043
SRR7403508	fruit	infected with penicillium expansum	mature	4.32484
SRR7403502	fruit	infected with penicillium expansum	mature	4.65215
SRR7403503	fruit	infected with penicillium expansum	mature	4.87132
SRR7403505	fruit	infected with penicillium expansum	mature	5.14501
SRR1613973	Central seeds	no	20DAPF	5.22726
SRR1613974	Central seeds	no	20DAPF	6.3523
SRR1613975	Central seeds	no	20DAPF	7.13848
SRR1613976	Lateral seeds	no	20DAPF	6.26478
SRR1613977	Lateral seeds	no	20DAPF	6.10219
SRR1613978	Lateral seeds	no	20DAPF	5.95141
SRR3744786	stem	no	mature	9.81508
SRR3744787	stem	no	mature	8.85099
SRR3744772	stem	no	mature	8.93799
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.99401
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.9898
SRR1089478	leaf	Virus-free	plantlets	4.65843
SRR1089477	leaf	ASGV-infected	plantlets	4.80275
SRR767660	leaf	uninfected	fully developed	2.87235
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.54718
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.73525
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.772913
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.76303
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.44788
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.72145
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.58551
SRR6308182	young leaf	no	immature leaves	7.42064
SRR3744769	leaf	no	mature	7.4919
SRR3744770	leaf	no	mature	8.32406
SRR3744771	leaf	no	mature	8.08445
SRR5405145	leaf	no	mature	6.0775
SRR6320561	leaf	no	mature	6.04297