Gene detail

Detail information of MD08G1038500 Annotation

Gene ID	Annotation
MD08G1038500	nucleolar essential protein-related

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0048

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1038500	mRNA	Chr08	2818288	2819154	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP006948.1	1	-
Pyrus x bretschneideri	Pbr006203.1	1	-

Gene Ontology

GO term	Description	Category
GO:0008168	methyltransferase activity	molecular_function

KEGG

KO	Description	Enzyme
K14568	rRNA small subunit pseudouridine methyltransferase Nep1	EC:2.1.1.260

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0.339065
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0.574286
SRR5252887	dormant buds	no	dormant buds(1 months)	0.152588
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.269401
SRR3744766	flower	no	mature	0.891071
SRR3744767	flower	no	mature	1.19899
SRR3744768	flower	no	mature	0.751547
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.5545
SRR6308192	pollen	no	open flowers	15.9257
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.11443
SRR3384921	fruit	no	2 week after full bloom	0.247726
SRR3384920	fruit	no	3 week after full bloom	0.218127
SRR3384919	fruit	no	4 week after full bloom	0.503794
SRR3384923	fruit	no	5 week after full bloom	0.574925
SRR3384918	fruit	no	6 week after full bloom	0.213337
SRR3384917	fruit	no	8 week after full bloom	0.462005
SRR3384916	fruit	no	10 week after full bloom	0.500152
SRR3384915	fruit	no	12 week after full bloom	0.473419
SRR3384914	fruit	no	14 week after full bloom	0.803511
SRR3384913	fruit	no	16 week after full bloom	0.676001
SRR3384912	fruit	no	18 week after full bloom	0.507514
SRR3384911	fruit	no	19 week after full bloom	0.608457
SRR3384910	fruit	no	20 week after full bloom	0.381124
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.15048
SRR768130	whole fruit	no	60 days post anthesis	0.252295
SRR768131	whole fruit	no	87 days post anthesis	0.189904
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0.639941
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.547173
SRR7403504	fruit	uninfected	mature	0.56974
SRR7403506	fruit	uninfected	mature	0.133744
SRR7403507	fruit	uninfected	mature	0.555793
SRR7403500	fruit	infected with penicillium expansum	mature	0.490841
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.700127
SRR7403502	fruit	infected with penicillium expansum	mature	0.81195
SRR7403503	fruit	infected with penicillium expansum	mature	0.604589
SRR7403505	fruit	infected with penicillium expansum	mature	0.543453
SRR1613973	Central seeds	no	20DAPF	1.35425
SRR1613974	Central seeds	no	20DAPF	0.837362
SRR1613975	Central seeds	no	20DAPF	0.789478
SRR1613976	Lateral seeds	no	20DAPF	0.69756
SRR1613977	Lateral seeds	no	20DAPF	0.655253
SRR1613978	Lateral seeds	no	20DAPF	0.796609
SRR3744786	stem	no	mature	0.323661
SRR3744787	stem	no	mature	0.160329
SRR3744772	stem	no	mature	0.373098
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0434442
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.59592
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.474215
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.28564
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.563525
SRR6308182	young leaf	no	immature leaves	0.135901
SRR3744769	leaf	no	mature	0.0548891
SRR3744770	leaf	no	mature	0.0583252
SRR3744771	leaf	no	mature	0.17295
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0