Gene detail

Detail information of MD08G1038600 Annotation

Gene ID	Annotation
MD08G1038600	allene oxide synthase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0123	CYP74A1 isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] hydroperoxide dehydratase [EC:4.2.1.92] dodecenoyl-CoA delta-isomerase activity allene oxide synthase activity isopentenyl-diphosphate delta-isomerase activity carnitine racemase activity 3-deoxy-7-phosphoheptulonate synthase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1038600	mRNA	Chr08	2825303	2826898	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Cytochrome P450 Family	CYP74A

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G42650.1	1	AOS;CYP74A;DDE2\|allene oxide synthase;CYTOCHROME P450 74A;DELAYED DEHISCENCE 2
Prunus persica	Prupe.1G386300.1.p	1	allene oxide synthase
Pyrus communis	PCP006949.1	1	-
Pyrus communis	PCP013261.1	1	-
Rosa multiflora	Rmu_sc0001670.1_g000032.1	1	-
Rubus occidentalis	Ro02_G02429	1	-
Fragaria vesca	mrna15063.1	1	allene oxide synthase
Vitis vinifera	GSVIVT01009616001	1	allene oxide synthase
Solanum lycopersicum	Solyc04g079730.1.1	1	allene oxide synthase
Populus trichocarpa	Potri.002G130700.1	1	allene oxide synthase
Nicotiana benthamiana	Niben101Scf05799g02010.1	1	Allene oxide synthase
Oryza sativa	LOC_Os02g12680.1	0.705	"cytochrome P450, putative, expressed"
Oryza sativa	LOC_Os03g55800.1	1	"cytochrome P450, putative, expressed"
Oryza sativa	LOC_Os02g12690.1	1	"cytochrome P450, putative, expressed"
Zea mays	GRMZM2G033098_P01	1	-
Zea mays	GRMZM2G376661_P01	0.847	-
Zea mays	GRMZM2G072653_P01	0.844	Cytochrome P450 CYP74A18

Gene Ontology

GO term	Description	Category
GO:0020037	heme binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0004497	monooxygenase activity	molecular_function
GO:0005506	iron ion binding	molecular_function
GO:0009055	electron carrier activity	molecular_function

KEGG

KO	Description	Enzyme
K01723	hydroperoxide dehydratase	EC:4.2.1.92

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.18	p450	359	468	1.40E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.93949
SRR5252888	dormant buds	no	dormant buds(0 month)	2.24249
SRR5252889	dormant buds	no	dormant buds(0 month)	2.4741
SRR5252886	dormant buds	no	dormant buds(1 months)	2.98429
SRR5252887	dormant buds	no	dormant buds(1 months)	1.8742
SRR5252884	dormant buds	no	dormant buds(2 months)	1.49655
SRR5252882	dormant buds	no	dormant buds(3 months)	3.5792
SRR5252883	dormant buds	no	dormant buds(3 months)	3.52271
SRR5252880	dormant buds	no	dormant buds(4 months)	2.18933
SRR5252881	dormant buds	no	dormant buds(4 months)	2.04637
SRR5252878	bud break	no	bud break	4.24651
SRR5252879	bud break	no	bud break	3.94531
SRR3744766	flower	no	mature	2.94882
SRR3744767	flower	no	mature	3.63857
SRR3744768	flower	no	mature	3.50968
SRR6308190	stigmas	no	open flowers	4.21476
SRR6308181	styles	no	open flowers	10.7941
SRR6308188	filaments	no	open flowers	13.9656
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.73242
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.42724
SRR6308194	sepals	no	open flowers	3.03855
SRR6308193	receptacles	no	open flowers	12.1162
SRR6308189	ovaries	no	open flowers	14.7374
SRR3384922	fruit	no	1 week after full bloom	78.3657
SRR3384921	fruit	no	2 week after full bloom	250.149
SRR3384920	fruit	no	3 week after full bloom	198.368
SRR3384919	fruit	no	4 week after full bloom	54.7743
SRR3384923	fruit	no	5 week after full bloom	40.5495
SRR3384918	fruit	no	6 week after full bloom	31.9406
SRR3384917	fruit	no	8 week after full bloom	29.094
SRR3384916	fruit	no	10 week after full bloom	24.2836
SRR3384915	fruit	no	12 week after full bloom	18.3908
SRR3384914	fruit	no	14 week after full bloom	22.8241
SRR3384913	fruit	no	16 week after full bloom	19.8589
SRR3384912	fruit	no	18 week after full bloom	10.6666
SRR3384911	fruit	no	19 week after full bloom	7.93153
SRR3384910	fruit	no	20 week after full bloom	6.52518
SRR768128	whole fruit	no	25 days post anthesis	20.7486
SRR768129	whole fruit	no	35 days post anthesis	36.4989
SRR768130	whole fruit	no	60 days post anthesis	76.4025
SRR768131	whole fruit	no	87 days post anthesis	10.9068
SRR7343308	immature fruit flesh	no	immature	183.598
SRR7343309	immature fruit flesh	no	immature	203.607
SRR6320494	ripe fruit flesh	no	mature	2.74824
SRR5405143	ripe fruit peel	no	mature	3.56533
SRR6320572	ripe fruit peel	no	mature	5.2943
SRR7403504	fruit	uninfected	mature	7.41143
SRR7403506	fruit	uninfected	mature	6.46613
SRR7403507	fruit	uninfected	mature	7.15056
SRR7403500	fruit	infected with penicillium expansum	mature	315.712
SRR7403501	fruit	infected with penicillium expansum	mature	260.321
SRR7403508	fruit	infected with penicillium expansum	mature	294.189
SRR7403502	fruit	infected with penicillium expansum	mature	364.845
SRR7403503	fruit	infected with penicillium expansum	mature	386.87
SRR7403505	fruit	infected with penicillium expansum	mature	389.93
SRR1613973	Central seeds	no	20DAPF	3.56377
SRR1613974	Central seeds	no	20DAPF	3.53411
SRR1613975	Central seeds	no	20DAPF	4.94851
SRR1613976	Lateral seeds	no	20DAPF	10.8455
SRR1613977	Lateral seeds	no	20DAPF	6.44385
SRR1613978	Lateral seeds	no	20DAPF	6.2113
SRR3744786	stem	no	mature	2.58631
SRR3744787	stem	no	mature	2.36198
SRR3744772	stem	no	mature	2.65027
SRX765691	seedling shoot apex	no	4-6 week old seedling	25.2521
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.3031
SRR1089478	leaf	Virus-free	plantlets	170.445
SRR1089477	leaf	ASGV-infected	plantlets	46.5683
SRR767660	leaf	uninfected	fully developed	7.26933
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	12.9346
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.54095
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	10.8878
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	5.27605
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	30.015
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.3838
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.65678
SRR6308182	young leaf	no	immature leaves	6.82744
SRR3744769	leaf	no	mature	2.89709
SRR3744770	leaf	no	mature	2.3544
SRR3744771	leaf	no	mature	3.10939
SRR5405145	leaf	no	mature	23.6719
SRR6320561	leaf	no	mature	12.1117