Gene detail

Detail information of MD08G1047700 Annotation

Gene ID	Annotation
MD08G1047700	glutamate receptor 2.8

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0242	protein serine/threonine/tyrosine kinase activity regulation of defense response to bacterium MAP kinase kinase kinase activity regulation of defense response to fungus regulation of salicylic acid mediated signaling pathway early endosome defense response to oomycetes protein autophosphorylation negative regulation of abscisic acid-activated signaling pathway MAPK cascade cell death response to water deprivation molybdenum cofactor sulfurtransferase [EC:2.8.1.9] protein binding selenocysteine lyase activity Mo-molybdopterin cofactor sulfurase activity response to fungus regulation of stem cell division molybdenum ion binding protein N-linked glycosylation sugar mediated signaling pathway response to bacterium molybdenum incorporation into molybdenum-molybdopterin complex regulation of post-embryonic root development endoplasmic reticulum unfolded protein response trans-Golgi network response to ethylene

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1047700	mRNA	Chr08	3638637	3644301	-

Sequences

CDS:

MD08G1047700

GATAAAAAATATCTAAGACTATTCTTTATTATAGGAAGTCAGTTTTGCATTAGATTATAAATAGGCAGTTCCCGTCAATTAAACTTCTACATCCGTAATTTTAAATTCTAGTTTGGCTGCTTTCAATGTAGCGAAGAATGCTTCAACTTTGAATTAAGTGGTGGAATCTAAGACTATTCCCATTTAGGCATATTTAACTACAAATAATATATGAGTCTTTAAGCGTAAGAAGTCATTCATCTTATTTACTTGCAAATTACAGTTTTAAATGAAAAATAAGTCAAACTATGATTTTTCTTCCGAATTACCAAAAGACGACAACAATAGAAATGAATATAAGAAGGAGAATAAAAATGAGTACGAAAAAAATTATTGAGAGAGTACCACAAAGTCAATAAAAATTAGTTTAATTTCCCATATAATATTGTTAATATATTCAATGTACATATCTTAATTTTCATAGTATATGGTTACATATTTGTTCTGGCCGTATAGATTGGGTCATGGCGACGACGACCGGCTGATTCTTTGAGAATTTCACAGGGACTTTTCCATGTGTGATTTTCCAGGTAATTTTCATGTGTACCTACTCTGCATATTCATTCATATATTTATATGTATATGCTTTAGCTTCACAAATAGATGTTACTTGCAAATTGAGAAAGCATTCGTTCCAATAACATGGGTGCCGTCAAGAAACTTTGTATAGTCTTTTTTTGCTTTCTCTTCCTCTTGTCATGGATTTTCAATGTGGCTACGGTTGCGGCGGTGGAAAACACAACGATCCAAGTGAATGTGGGTGTTGTTGTTGACCTCGATCAACCCAGTCAGAGCGGGAAGATGTATTTGAGTTGCATCAAAATGGCCATCGAGGACTTCTATGCATCTCATGCTCACTTCAAGACCAGGCTTGTTTTGAACACTAGGGACTCCAAACAAACTGTTGTTGGTGCAGCTGCTGCAGCTCTAGACCTGATAAAGAAGGTAGAAGTGCAAGCAATCCTAGGCCCAGTGACATCAATGCAGGCTAGCTTTGTTGTTAATCTTGGAGACCAAGCTCATGTACCCATTTTATCATTTTCTGCAACAAGCCCCTCTCTTACTTCACTCCAAAGCTCCTACTTCTTCCGAATCACACAAACCGACTCTCACCAAGTGAAGGCCATAAGTGCCATTGTTAAAAACTTCGGATGGAGACAAGTTGTGCCAATTTATGTAGACAATACGTATGGCGAGGGAGTCATACCCTTTTTAATTGATGCATTGCAAGAGGTTGATGCTCATGTCCCTTATCGGAGTGTCATTCCCACATCAGCTACAGATGTACAAATTGAAAAAGAGCTTCACAAGTTAATGACAATGCAAACTAGAGTCTTCATTGTGCACATGTTGCCCAAACTTTGCACCAAGCTATTTGCCAAGGCAAAAGAGGTAGGAATGATGAGAGAAGGCTATGTTTGGATAATGACCAACGGGGTAGGAAATCGTTTATGGTCAATCCCTCCAGTGGTTCTGAATTCAATGCAAGGAGTATTAGGTGTGGAAACTGACGTTCCAAGCACAGAGGAGCTTAAAATTTTCCGAAAGCGGTGGAAAAGAAGATTCCAACAAGACAATCCAGCCATCATCAATGTTGATGTCGATGTATTTGGATTTCGGGCTTATGATGCAGCTTTTGCACTAGCCTTTGCAGTAGAAGAAGTTGGGTTTAATAAAAACTCTGATTTCCGAAAGAGGAATAATTCCGATAACACAACAGATCTTGATACCTTCGAGGTCTCTCAATATGGTCCCAAACTTTCACAAGCCTTATCTAATACTTCATTCAAAGGCATAGCTGGTGACTTCAGGCTTGACGATGGGCAACTTCAGGCATCAACATTTAGGATAGTTAATGTAAATGGTGATGGAGTAAGAACTATTGCATTTTGGACACCAGAAAATGGTATGGTAAAGACACTGAATTCAGCAAACACAAGCATTCTTTCAATTTCAACTTCCAAGTGCAATCTTACAAGCATACTTTCAACATCTAAGTGCAATCTTTCACCGATTATATGGCCTGGAGATTCTTTCTCCGTTCCCAAGGGATGGGATATCCCAACAAATGACAAGAAGATGAGAATTGGAGTTCATGTAAAGCTTGGTTTTAGTGAGTTTGTTAAGGTAACCAAGAACCCTAGCACTAACACAACGGAAGTCACTGGGTTCAGTATTGATGTCTTTGAGGCTGCAGTTGAAGTACTACCATACGCTCTTCCTTACGAGTTCATTCCCTTTGAGAATTCTGATGGAACAATGGCTGGAACTTACAATGATTTGGTCTATCAAGTATCTCTTGAGAAATTTGATGCTGTGGTGGGAGACACCACAATTAGGGCAAACAGGTCTTTGTACGTGGACTTCACGATGCCCTACACAGAATCGGGGGTAGTAATGGTTGTGCCAAGCAGAGACACCAGGAGCAAAAATGCATGGGTTTTCTTGAAGCCTTTGACATGGGACTTGTGGCTTACGACTTTTTGTTTCTTCATCTTCATTGGTTTCGTCATTTGGGTACTTGAACATCAAATTAATGAAGATTTTCGCGGCCCTCCCTCACATCAAGTTGGCACAAGCTTTTGGTTCTCCTTCTCCACCATGGTGATTTCACATAGGGAGAGAGTGGTTAGCAACTTGGCCAGATTCTTGATGATTATATGGGTGTTTGTTGTGCTAGTTCTGACACAAAGCTACACAGCTAATCTAGCATCGCTATTAACAGTTGAACAACTCCAACCAACTTTCACGAATATAAAGGATATACTAAGAAAAGGGGAGAATGTTGGATGCATGGAGAATAGCTTTGTTTGCGAACTCTTGATGAAACAAATCGGTTTCCATGAGTCCAAGCTTAAGGGTATGAATTCTATGGAAGAATGCGATGAAGCTCTTTCGAAGGGGAGTGGAAAGGGTGGTATTGCAGCTGTTGTTGATGAAACCCCAAATATGAAGCTGTTCATTGCGAAATATTGTTCCAAATATACCATGATTGGTCCAATCTTCAAAACTGATGGCTATGGCTTTGTGTTTCCAAAGCGTTCTCCTCTTGTACCCGATATTTCACAAGCAGTCCTAAGCTTAACGGAAGGAGAAAAGATCATGAAAATTGGGAGCAAATGGTTCAGTCAAGAAAGCAATTGTGAAGATAACTCCAGGATTCCAAGGATCTCAAGCAACACTCTTGGTCTTGAAAGCTTTTGGGGCCTATTCCTAATTGCCGGGGCGGCTTCAATTCTAGCTCTCATCATATTTGTAGCTTCCTTCTTTTACAAGCATAGGCATGTCTTGGAGCAGCCTGATTCCAGAACTTCTTCGAGATGGAGAAGGGTTCGAGCCATGGTTGAAATTTTCAACGAAAAAGACCTCAACTCCCATACTTTTAAAAGCCGTCAACAAGAAGAAGGAATTGCGGGGGTTGGAGAAGAAGTTAAGGCCTCACCTAATAGGAACTGGCCTGAAAGTCCATTCAGCTATGCAAACGACACTGATAAGGTTTTTGGATTCTACGAAGGGCAACAAACGCCATCTACTACTAGTCATGGGTCGCCGGAGCTTACTATCACTGTTCAAGAAATGGGCACATATACGATGGACTCTATAACTAGTTAGGAGGGATTTTTCAATGTGCCTGGAATATGGGCACATAAGTAGAGAGCAAGGTTCTAAAAAACGCTAGGCGCTAGTCGAGCGGCGGGCTAGTGCCTAGCGCCTAACCAGCTAGGCGGGATCTAGGCGGCGTAGATGGATTTAGGTAAATTTCTTGTATATTTTGTAAATAAATGCATATTGACACTTACAAAAAATTATACTTGTATGAAATCTATGGATAAGATAATAAAAAAATGATA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G399700.1.p	1	glutamate receptor 2.8
Pyrus x bretschneideri	Pbr036455.1	1	-
Rosa multiflora	Rmu_sc0000893.1_g000003.1	1	-

Gene Ontology

GO term	Description	Category
GO:0004970	ionotropic glutamate receptor activity	molecular_function
GO:0016020	membrane	cellular component
GO:0006810	transport	biological_process
GO:0005234	extracellular-glutamate-gated ion channel activity	molecular_function

KEGG

KO	Description	Enzyme
K05387	"glutamate receptor, ionotropic, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00497.16	SBP_bac_3	504	829	1.30E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.47166
SRR5252888	dormant buds	no	dormant buds(0 month)	4.45574
SRR5252889	dormant buds	no	dormant buds(0 month)	6.25453
SRR5252886	dormant buds	no	dormant buds(1 months)	4.02838
SRR5252887	dormant buds	no	dormant buds(1 months)	3.92911
SRR5252884	dormant buds	no	dormant buds(2 months)	5.01983
SRR5252882	dormant buds	no	dormant buds(3 months)	4.644
SRR5252883	dormant buds	no	dormant buds(3 months)	4.28009
SRR5252880	dormant buds	no	dormant buds(4 months)	5.97753
SRR5252881	dormant buds	no	dormant buds(4 months)	4.59148
SRR5252878	bud break	no	bud break	3.53776
SRR5252879	bud break	no	bud break	2.87048
SRR3744766	flower	no	mature	2.14297
SRR3744767	flower	no	mature	1.97205
SRR3744768	flower	no	mature	2.00846
SRR6308190	stigmas	no	open flowers	4.00633
SRR6308181	styles	no	open flowers	3.21162
SRR6308188	filaments	no	open flowers	2.96578
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.76688
SRR6308192	pollen	no	open flowers	1.05367
SRR6308191	petals	no	open flowers	2.77121
SRR6308194	sepals	no	open flowers	4.17697
SRR6308193	receptacles	no	open flowers	2.94499
SRR6308189	ovaries	no	open flowers	2.68532
SRR3384922	fruit	no	1 week after full bloom	1.30007
SRR3384921	fruit	no	2 week after full bloom	0.989467
SRR3384920	fruit	no	3 week after full bloom	1.10357
SRR3384919	fruit	no	4 week after full bloom	1.21629
SRR3384923	fruit	no	5 week after full bloom	1.0206
SRR3384918	fruit	no	6 week after full bloom	1.23082
SRR3384917	fruit	no	8 week after full bloom	0.902164
SRR3384916	fruit	no	10 week after full bloom	1.42059
SRR3384915	fruit	no	12 week after full bloom	1.61779
SRR3384914	fruit	no	14 week after full bloom	1.32451
SRR3384913	fruit	no	16 week after full bloom	0.816024
SRR3384912	fruit	no	18 week after full bloom	1.03608
SRR3384911	fruit	no	19 week after full bloom	1.23135
SRR3384910	fruit	no	20 week after full bloom	0.99794
SRR768128	whole fruit	no	25 days post anthesis	2.37799
SRR768129	whole fruit	no	35 days post anthesis	0.780722
SRR768130	whole fruit	no	60 days post anthesis	0.451364
SRR768131	whole fruit	no	87 days post anthesis	1.29103
SRR7343308	immature fruit flesh	no	immature	2.03801
SRR7343309	immature fruit flesh	no	immature	2.39077
SRR6320494	ripe fruit flesh	no	mature	1.26982
SRR5405143	ripe fruit peel	no	mature	2.93389
SRR6320572	ripe fruit peel	no	mature	0.605199
SRR7403504	fruit	uninfected	mature	1.15266
SRR7403506	fruit	uninfected	mature	1.15793
SRR7403507	fruit	uninfected	mature	1.31816
SRR7403500	fruit	infected with penicillium expansum	mature	20.9415
SRR7403501	fruit	infected with penicillium expansum	mature	21.5413
SRR7403508	fruit	infected with penicillium expansum	mature	20.2782
SRR7403502	fruit	infected with penicillium expansum	mature	14.0595
SRR7403503	fruit	infected with penicillium expansum	mature	12.8163
SRR7403505	fruit	infected with penicillium expansum	mature	13.3878
SRR1613973	Central seeds	no	20DAPF	0.761227
SRR1613974	Central seeds	no	20DAPF	0.895343
SRR1613975	Central seeds	no	20DAPF	0.817952
SRR1613976	Lateral seeds	no	20DAPF	1.04859
SRR1613977	Lateral seeds	no	20DAPF	0.887432
SRR1613978	Lateral seeds	no	20DAPF	0.976483
SRR3744786	stem	no	mature	3.33905
SRR3744787	stem	no	mature	4.20392
SRR3744772	stem	no	mature	4.6478
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.3998
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.20829
SRR1089478	leaf	Virus-free	plantlets	0.117681
SRR1089477	leaf	ASGV-infected	plantlets	0.517277
SRR767660	leaf	uninfected	fully developed	0.238899
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.666032
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.727661
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.968535
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.40605
SRR6308182	young leaf	no	immature leaves	2.94915
SRR3744769	leaf	no	mature	2.30525
SRR3744770	leaf	no	mature	2.67219
SRR3744771	leaf	no	mature	2.55875
SRR5405145	leaf	no	mature	2.57687
SRR6320561	leaf	no	mature	1.49644