Gene detail

Detail information of MD08G1070000 Annotation

Gene ID	Annotation
MD08G1070000	mechanosensitive channel of small conductance-like 10

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1070000	mRNA	Chr08	5543453	5547836	+

Sequences

CDS:

MD08G1070000

GGCGTTCTTAGGAATCTGCATTTCCTAAAAATTTGAACCCTCTCTGTCCCTCTCTGACTTCTCTGCAGCCAACGCTTCCCCCTCTACTCATTCACCATCACACTTTTATAGATTTTTTTTTTATGCTTTGGGGTCTGAAAGTTAATTTTCCAACCCAGTTGAGCACTTGCTTTGCACTGCTGAATCGAAGAATCAGCATCAAGCAAATGATCTTCCATCGTTCCTTGGTGGGGTGCTCTGCTGTCCTCTGCTCTGTTAATAGCTCTGGGTTTCAATGAAGGCCATAGAGAGAGAAAAGCTTTTGAAAGCTGGGGAAGTAAGCATGTCGGAGAAGCTTTCTTCCCATGGAGGTGAAGTTGTACTGGAAGTTCGAAGCGAGGAGAGCAATGCAGCAAAAGGATCTCCCTCAGAAGGCTCAGAATATTCAGCTCCCAGGCAAAGCAAAATTGGCTCACCTGCCAAAGCATCCGCTGAGTCCAGCAGTGGGTTCTCTAAGTCAGTCCCAGTGAGTTACGCTTCGCCTGAATTTTCGAGAGCCAGTCCCGGTAAGCCTCCCAAGATTCCCAACCGCAATGAGAGTCTTGCTAGGAGAAAGTCACTAAATAGGTCAATGTACTCGAAACCAAAGTCAAGATTTGGTGAACCATCAGTAGGCATTGATCACAATATGTTTGAAGAAGATCAAGTTGGTGCAAATTCCCCTTATAGGGTTTCATTCAATAGGGCTTCCCCAATTGATAAATCAGGTATTAGGAGTGTTTCAATCGCAGGGAGTGGGAGGATACCGCCTTCTCCAGGCAGGATTAAAGAGCAGGAGGATGAAGAGATTTACAAGAAGGTTAAATTGAGTAGAGATAATAATAGGAAATTGAAAATGAAAACTGTGGTCTTGCTTGAGTGGGTTGCTTTTCTGGTACTTCTGGCTTGTTTAGTGTCTAGCTTGACTGTCGAGAAATTGGAGAATTATATGCTTTGGGGCTTGGAAATATGGAAATGGTGTGTGCTTGTGATGGTGATTTTCTGTGGAATGTTGGTTACGAATTGGTTTATGCATTTCATAGTGTTTGTGATCGAGAGGAATTTTTTGCTGAGGAAGAAGGTTTTGTATTTTGTTCATGGCATGAAAAAGAGCGTTCAGGTTTCGATTTGGTTGTCTCTGGTTCTTCTCACATGGCTACTGGTGTTCAATCGTGGGGTTGAGCGATCAGAGACTTCCACGAAGATTTTGAATTATGTCACATGGACTCTTGTTTCCATTCTTGTTGGGGCTATTTTGTGGTTGTTAAAAACTTTGTTCCTTAAGATTTTAGCATCTACCTTCCATGTCAACACCTTTTTCGATAGAATCCAAGAATCGATATTCCATCAGTATGTTCTTCAGACACTTTCAGGGCCGGCACTTATAGAGGAGGCTGAGAGGGTTGGGATATGTCCGAGCACTGGGCATCTGAGTTTCAGGACAACAAAGAAGGCTAAAGCTGGGAAGGAGAAAGGGGTGATTGATATGGCAAAGCTTCAGAAGATTAAGCAAGAGAAGGTTTCAGCTTGGACCATGAAGGTATTGGTGGATGCAGTTTCGAGTTCAGGGCTGTCCACCATCTCCCATACATTGGATGAGATGGAAGGGGAAGGAGCTGAACAGATGGATACAGAGATTACTAATGAGATGCAAGCAACTGCCGCTGCCTATCACATTTTTTTGAACGTCGCACCACAGGGTTCCACGTACATTGAGGAGGAGGACCTCATGAGGTTCATGATTAAGGAAGAGGTGGATTATGTGTTTCCGCTGTTTGATGGAGCAGAGACCAGACGTATTGACAGAAAATCTCTAACAGATTGGGTGGTAAAGGTCTACAATGGTCGCAAAGCATTGGCTCATTCTTTAAACGACACCAAAACAGCTGTAAGGCAGTTGAACAAACTTGTGACTGGCATCCTGGTCGTTATTACCATTGTAGTGTGGCTTCTATTGATGGAAATTGCGACCACAAAAGTACTTGTCCTCCTCTCGTCACAGCTCGTAGTTGCAGCTTTTATGTTTGGAAACACTTGCAAGAATATATTTGAAGCTATAATTTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGACCGCTGTGTTGTTGATGGTGTTCCGTTGATGGTTGAGGAGATGAACATCTTAAATACAGTCTTCTTGAAACTCAATATGGAGAAGGTATACTATCCGAATTCAGTTTTGTCCACGAAACCCATCAGCAATTACTTCAGAAGTCCAGACATGGGTGACGTTGTCGAATTCCAAATTGCTTTTTCGACAACAGTGGAGAGGATAGGCCTGCTGAAAGAGAAAATAAAGAAGCATTTGGAGAGGAACTCGCAGCATTGGCATCCTAACCACAAAGTGGTAGTGATTGAAATCGAAAATCTCAACAAGTTAAAGATGGGCCTGTATGTCACTCACACGATGAACTTTCAAGACTTCGGAGAAAAGAATACGCGGAGAACTGAACTAGTCATCGAACTGAAGAAAATGTTGGAAGAGCTCCAAATCAAGTACAATCTGCCGCCCCAAGAAGTTCAACTCACTCAAACTAAATCAGATGCAGCTGTTGCCAACAAATGAGTTATAGCGGATTAGAAGGAAGAACTTTGATGATTTTGTTCTCTTTTCCGGTAGGATTTTTTACGAAGTACAATTAGTTTCAGTAGCTAATTGAGATTTCTGCACTTCTTTTTTTTTTTTTTTTTTTTTTTGTGGTAACTGGTGACTAGAATTCTTCATTTGAACAAGGCACTAAATTTATCTGGATTAATAACCAAAATATTTCTTCTGGTATGTCTTCAAATTCCATAGCATACGTGATGTGCTGAGTGCCATGTATGCTTTCTCAAATGCAATCCTGAATT

Protein:

Gene family

Gene family	Subfamily
Transporter family	MscS

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G12080.2	1	ATMSL10;MSL10\|mechanosensitive channel of small conductance-like 10
Arabidopsis thaliana	AT5G12080.3	1	ATMSL10;MSL10\|mechanosensitive channel of small conductance-like 10
Arabidopsis thaliana	AT5G12080.1	1	ATMSL10;MSL10\|mechanosensitive channel of small conductance-like 10
Prunus persica	Prupe.1G406100.2.p	1	mechanosensitive channel of small conductance-like 10
Prunus persica	Prupe.1G406100.3.p	1	mechanosensitive channel of small conductance-like 10
Prunus persica	Prupe.1G406100.4.p	1	mechanosensitive channel of small conductance-like 10
Prunus persica	Prupe.1G406100.1.p	1	mechanosensitive channel of small conductance-like 10
Pyrus communis	PCP012911.1	1	-
Pyrus x bretschneideri	Pbr024984.1	1	-
Solanum lycopersicum	Solyc08g061980.2.1	1	mechanosensitive channel of small conductance-like 10
Populus trichocarpa	Potri.006G222500.2	1	mechanosensitive channel of small conductance-like 10
Nicotiana benthamiana	Niben101Scf11108g00009.1	1	Mechanosensitive ion channel protein 10

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component
GO:0055085	transmembrane transport	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.11622
SRR5252888	dormant buds	no	dormant buds(0 month)	5.62047
SRR5252889	dormant buds	no	dormant buds(0 month)	7.78768
SRR5252886	dormant buds	no	dormant buds(1 months)	3.77983
SRR5252887	dormant buds	no	dormant buds(1 months)	4.72395
SRR5252884	dormant buds	no	dormant buds(2 months)	2.79193
SRR5252882	dormant buds	no	dormant buds(3 months)	2.02565
SRR5252883	dormant buds	no	dormant buds(3 months)	1.98006
SRR5252880	dormant buds	no	dormant buds(4 months)	4.57835
SRR5252881	dormant buds	no	dormant buds(4 months)	3.46485
SRR5252878	bud break	no	bud break	7.93588
SRR5252879	bud break	no	bud break	8.14331
SRR3744766	flower	no	mature	0.839436
SRR3744767	flower	no	mature	0.948704
SRR3744768	flower	no	mature	0.916507
SRR6308190	stigmas	no	open flowers	0.42929
SRR6308181	styles	no	open flowers	0.164312
SRR6308188	filaments	no	open flowers	8.49325
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.445455
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.737622
SRR6308194	sepals	no	open flowers	0.714763
SRR6308193	receptacles	no	open flowers	2.68761
SRR6308189	ovaries	no	open flowers	0.231777
SRR3384922	fruit	no	1 week after full bloom	2.17505
SRR3384921	fruit	no	2 week after full bloom	2.95804
SRR3384920	fruit	no	3 week after full bloom	1.32888
SRR3384919	fruit	no	4 week after full bloom	1.0067
SRR3384923	fruit	no	5 week after full bloom	0.793914
SRR3384918	fruit	no	6 week after full bloom	0.675839
SRR3384917	fruit	no	8 week after full bloom	0.375284
SRR3384916	fruit	no	10 week after full bloom	0.560653
SRR3384915	fruit	no	12 week after full bloom	0.721043
SRR3384914	fruit	no	14 week after full bloom	0.447557
SRR3384913	fruit	no	16 week after full bloom	0.329467
SRR3384912	fruit	no	18 week after full bloom	0.77297
SRR3384911	fruit	no	19 week after full bloom	1.27515
SRR3384910	fruit	no	20 week after full bloom	1.76463
SRR768128	whole fruit	no	25 days post anthesis	5.61655
SRR768129	whole fruit	no	35 days post anthesis	3.87796
SRR768130	whole fruit	no	60 days post anthesis	2.04341
SRR768131	whole fruit	no	87 days post anthesis	1.81775
SRR7343308	immature fruit flesh	no	immature	2.13991
SRR7343309	immature fruit flesh	no	immature	1.14915
SRR6320494	ripe fruit flesh	no	mature	1.10782
SRR5405143	ripe fruit peel	no	mature	2.56572
SRR6320572	ripe fruit peel	no	mature	1.79448
SRR7403504	fruit	uninfected	mature	1.48856
SRR7403506	fruit	uninfected	mature	1.26124
SRR7403507	fruit	uninfected	mature	1.18633
SRR7403500	fruit	infected with penicillium expansum	mature	0.160303
SRR7403501	fruit	infected with penicillium expansum	mature	0.0594714
SRR7403508	fruit	infected with penicillium expansum	mature	0.300107
SRR7403502	fruit	infected with penicillium expansum	mature	0.331467
SRR7403503	fruit	infected with penicillium expansum	mature	0.333199
SRR7403505	fruit	infected with penicillium expansum	mature	0.399342
SRR1613973	Central seeds	no	20DAPF	3.37373
SRR1613974	Central seeds	no	20DAPF	3.47102
SRR1613975	Central seeds	no	20DAPF	3.3805
SRR1613976	Lateral seeds	no	20DAPF	2.74062
SRR1613977	Lateral seeds	no	20DAPF	2.60496
SRR1613978	Lateral seeds	no	20DAPF	2.91093
SRR3744786	stem	no	mature	1.10486
SRR3744787	stem	no	mature	0.916689
SRR3744772	stem	no	mature	0.889259
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.28039
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.77719
SRR1089478	leaf	Virus-free	plantlets	1.39855
SRR1089477	leaf	ASGV-infected	plantlets	1.04312
SRR767660	leaf	uninfected	fully developed	0.32754
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.76731
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.991243
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.705084
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0.685751
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.13929
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.746061
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.487148
SRR6308182	young leaf	no	immature leaves	3.24992
SRR3744769	leaf	no	mature	0.598051
SRR3744770	leaf	no	mature	0.354494
SRR3744771	leaf	no	mature	0.603394
SRR5405145	leaf	no	mature	1.0512
SRR6320561	leaf	no	mature	0.28278