Gene detail

Detail information of MD08G1088900 Annotation

Gene ID	Annotation
MD08G1088900	Gibberellin-regulated family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1088900	mRNA	Chr08	7369411	7370286	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G39540.1	1	Gibberellin-regulated family protein
Arabidopsis thaliana	AT5G59845.1	1	Gibberellin-regulated family protein
Pyrus communis	PCP039222.1	1	-
Pyrus x bretschneideri	Pbr022000.1	1	-
Rubus occidentalis	Ro02_G00533	1	-
Fragaria vesca	mrna02539.1	1	Gibberellin-regulated family protein
Vitis vinifera	GSVIVT01009384001	1	Gibberellin-regulated family protein
Solanum lycopersicum	Solyc12g042520.1.1	1	Gibberellin-regulated family protein
Populus trichocarpa	Potri.014G020100.1	1	Gibberellin-regulated family protein
Nicotiana benthamiana	Niben101Scf04104g09003.1	1	Gibberellin-regulated protein 10
Nicotiana benthamiana	Niben101Scf01563g00013.1	1	Gibberellin-regulated protein 10
Oryza sativa	LOC_Os03g55290.1	1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"
Zea mays	GRMZM2G077034_P01	1	Gibberellin-regulated family protein

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.62215
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.437165
SRR5252879	bud break	no	bud break	1.21192
SRR3744766	flower	no	mature	4.211
SRR3744767	flower	no	mature	4.7788
SRR3744768	flower	no	mature	5.06379
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0.863004
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.730178
SRR6308194	sepals	no	open flowers	0.354182
SRR6308193	receptacles	no	open flowers	1.12893
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.411964
SRR3384921	fruit	no	2 week after full bloom	2.45259
SRR3384920	fruit	no	3 week after full bloom	1.37426
SRR3384919	fruit	no	4 week after full bloom	1.63236
SRR3384923	fruit	no	5 week after full bloom	1.20739
SRR3384918	fruit	no	6 week after full bloom	6.14433
SRR3384917	fruit	no	8 week after full bloom	0.277214
SRR3384916	fruit	no	10 week after full bloom	1.26043
SRR3384915	fruit	no	12 week after full bloom	2.34352
SRR3384914	fruit	no	14 week after full bloom	1.44638
SRR3384913	fruit	no	16 week after full bloom	1.21685
SRR3384912	fruit	no	18 week after full bloom	1.59873
SRR3384911	fruit	no	19 week after full bloom	1.31432
SRR3384910	fruit	no	20 week after full bloom	8.91864
SRR768128	whole fruit	no	25 days post anthesis	1.71376
SRR768129	whole fruit	no	35 days post anthesis	9.14099
SRR768130	whole fruit	no	60 days post anthesis	23.4394
SRR768131	whole fruit	no	87 days post anthesis	1.01787
SRR7343308	immature fruit flesh	no	immature	3.66848
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	1.13439
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.340018
SRR7403506	fruit	uninfected	mature	0.119726
SRR7403507	fruit	uninfected	mature	0.142155
SRR7403500	fruit	infected with penicillium expansum	mature	1.17172
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.626748
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.270612
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	90.327
SRR1613974	Central seeds	no	20DAPF	80.7028
SRR1613975	Central seeds	no	20DAPF	89.8648
SRR1613976	Lateral seeds	no	20DAPF	75.5441
SRR1613977	Lateral seeds	no	20DAPF	73.3064
SRR1613978	Lateral seeds	no	20DAPF	64.3464
SRR3744786	stem	no	mature	1.31076
SRR3744787	stem	no	mature	2.10196
SRR3744772	stem	no	mature	2.29598
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.537156
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.0913
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.300588
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.500121
SRR6308182	young leaf	no	immature leaves	3.54941
SRR3744769	leaf	no	mature	2.03802
SRR3744770	leaf	no	mature	1.42877
SRR3744771	leaf	no	mature	0.764885
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	4.49088