Gene detail

Detail information of MD08G1103300 Annotation

Gene ID	Annotation
MD08G1103300	origin recognition complex second largest subunit 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0568	(1->3)-beta-D-glucan binding carbohydrate kinase activity DNA replication origin binding pyridoxamine-phosphate oxidase activity extracellular region origin recognition complex

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1103300	mRNA	Chr08	8744828	8747201	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G37560.1	1	ATORC2;ORC2\|ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2
Arabidopsis thaliana	AT2G37560.2	0.792	ATORC2;ORC2\|ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2
Prunus persica	Prupe.1G438300.1.p	1	origin recognition complex second largest subunit 2
Pyrus communis	PCP033812.1	1	-
Pyrus x bretschneideri	Pbr019618.1	1	-
Rosa multiflora	Rmu_sc0000031.1_g000024.1	1	-
Rubus occidentalis	Ro02_G34904	1	-
Fragaria vesca	mrna09080.1	1	origin recognition complex second largest subunit 2
Vitis vinifera	GSVIVT01009522001	1	origin recognition complex second largest subunit 2
Solanum lycopersicum	Solyc06g073510.2.1	1	origin recognition complex second largest subunit 2
Populus trichocarpa	Potri.003G094800.1	1	origin recognition complex second largest subunit 2
Nicotiana benthamiana	Niben101Scf00430g02009.1	1	Origin recognition complex subunit 2
Oryza sativa	LOC_Os03g08640.1	1	"ORC2 - Putative origin recognition complex subunit 2, expressed"

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0006260	DNA replication	biological_process
GO:0000808	origin recognition complex	cellular component

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.50614
SRR5252888	dormant buds	no	dormant buds(0 month)	0.999891
SRR5252889	dormant buds	no	dormant buds(0 month)	0.849434
SRR5252886	dormant buds	no	dormant buds(1 months)	1.52419
SRR5252887	dormant buds	no	dormant buds(1 months)	0.449978
SRR5252884	dormant buds	no	dormant buds(2 months)	0.718614
SRR5252882	dormant buds	no	dormant buds(3 months)	0.864877
SRR5252883	dormant buds	no	dormant buds(3 months)	0.314144
SRR5252880	dormant buds	no	dormant buds(4 months)	2.30174
SRR5252881	dormant buds	no	dormant buds(4 months)	2.63468
SRR5252878	bud break	no	bud break	3.72548
SRR5252879	bud break	no	bud break	6.75285
SRR3744766	flower	no	mature	0.333714
SRR3744767	flower	no	mature	0.292403
SRR3744768	flower	no	mature	0.26803
SRR6308190	stigmas	no	open flowers	0.113878
SRR6308181	styles	no	open flowers	0.391401
SRR6308188	filaments	no	open flowers	0.588716
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.15161
SRR6308192	pollen	no	open flowers	0.864227
SRR6308191	petals	no	open flowers	1.13086
SRR6308194	sepals	no	open flowers	0.608948
SRR6308193	receptacles	no	open flowers	0.67984
SRR6308189	ovaries	no	open flowers	1.02571
SRR3384922	fruit	no	1 week after full bloom	2.63163
SRR3384921	fruit	no	2 week after full bloom	2.84857
SRR3384920	fruit	no	3 week after full bloom	1.9294
SRR3384919	fruit	no	4 week after full bloom	2.49547
SRR3384923	fruit	no	5 week after full bloom	1.18659
SRR3384918	fruit	no	6 week after full bloom	1.57252
SRR3384917	fruit	no	8 week after full bloom	1.54381
SRR3384916	fruit	no	10 week after full bloom	1.00277
SRR3384915	fruit	no	12 week after full bloom	0.907298
SRR3384914	fruit	no	14 week after full bloom	1.21839
SRR3384913	fruit	no	16 week after full bloom	1.59451
SRR3384912	fruit	no	18 week after full bloom	0.44891
SRR3384911	fruit	no	19 week after full bloom	0.789355
SRR3384910	fruit	no	20 week after full bloom	1.12372
SRR768128	whole fruit	no	25 days post anthesis	1.7846
SRR768129	whole fruit	no	35 days post anthesis	4.27583
SRR768130	whole fruit	no	60 days post anthesis	0.896104
SRR768131	whole fruit	no	87 days post anthesis	1.01176
SRR7343308	immature fruit flesh	no	immature	1.59533
SRR7343309	immature fruit flesh	no	immature	1.19437
SRR6320494	ripe fruit flesh	no	mature	0.380382
SRR5405143	ripe fruit peel	no	mature	0.223004
SRR6320572	ripe fruit peel	no	mature	0.657457
SRR7403504	fruit	uninfected	mature	0.262035
SRR7403506	fruit	uninfected	mature	0.276802
SRR7403507	fruit	uninfected	mature	0.328655
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.287146
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.160042
SRR7403503	fruit	infected with penicillium expansum	mature	0.536264
SRR7403505	fruit	infected with penicillium expansum	mature	0.241018
SRR1613973	Central seeds	no	20DAPF	1.68804
SRR1613974	Central seeds	no	20DAPF	1.89145
SRR1613975	Central seeds	no	20DAPF	2.00562
SRR1613976	Lateral seeds	no	20DAPF	1.89277
SRR1613977	Lateral seeds	no	20DAPF	2.02473
SRR1613978	Lateral seeds	no	20DAPF	1.80378
SRR3744786	stem	no	mature	0.280937
SRR3744787	stem	no	mature	0.49428
SRR3744772	stem	no	mature	0.246489
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.27954
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.5934
SRR1089478	leaf	Virus-free	plantlets	2.20038
SRR1089477	leaf	ASGV-infected	plantlets	1.10441
SRR767660	leaf	uninfected	fully developed	0.7875
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.82497
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.757405
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.170515
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	8.39978
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.134477
SRR3744771	leaf	no	mature	0.0994124
SRR5405145	leaf	no	mature	0.230723
SRR6320561	leaf	no	mature	0.338637