Gene detail

Detail information of MD08G1164000 Annotation

Gene ID	Annotation
MD08G1164000	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0137	F-type H+-transporting ATPase subunit a

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1164000	mRNA	Chr08	19266254	19269175	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Nicotiana benthamiana	Niben101Scf05374g01018.1	1	Sister chromatid cohesion protein PDS5 homolog B
Zea mays	GRMZM2G087619_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005488	binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.534064
SRR5252888	dormant buds	no	dormant buds(0 month)	7.87026
SRR5252889	dormant buds	no	dormant buds(0 month)	9.97445
SRR5252886	dormant buds	no	dormant buds(1 months)	2.90528
SRR5252887	dormant buds	no	dormant buds(1 months)	4.90407
SRR5252884	dormant buds	no	dormant buds(2 months)	5.36623
SRR5252882	dormant buds	no	dormant buds(3 months)	4.21836
SRR5252883	dormant buds	no	dormant buds(3 months)	6.1024
SRR5252880	dormant buds	no	dormant buds(4 months)	8.12956
SRR5252881	dormant buds	no	dormant buds(4 months)	6.44534
SRR5252878	bud break	no	bud break	9.97701
SRR5252879	bud break	no	bud break	4.73001
SRR3744766	flower	no	mature	0.551191
SRR3744767	flower	no	mature	0.268324
SRR3744768	flower	no	mature	0.216471
SRR6308190	stigmas	no	open flowers	0.45957
SRR6308181	styles	no	open flowers	0.592312
SRR6308188	filaments	no	open flowers	0.296988
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.458869
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.633845
SRR6308194	sepals	no	open flowers	0.491493
SRR6308193	receptacles	no	open flowers	0.587903
SRR6308189	ovaries	no	open flowers	0.875613
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0.0737065
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0.171058
SRR3384918	fruit	no	6 week after full bloom	0.0634744
SRR3384917	fruit	no	8 week after full bloom	0.274922
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0.0704286
SRR3384914	fruit	no	14 week after full bloom	0.204917
SRR3384913	fruit	no	16 week after full bloom	0.241358
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.144828
SRR3384910	fruit	no	20 week after full bloom	0.113396
SRR768128	whole fruit	no	25 days post anthesis	1.22781
SRR768129	whole fruit	no	35 days post anthesis	0.0898876
SRR768130	whole fruit	no	60 days post anthesis	0.150705
SRR768131	whole fruit	no	87 days post anthesis	0.567185
SRR7343308	immature fruit flesh	no	immature	1.20743
SRR7343309	immature fruit flesh	no	immature	1.2053
SRR6320494	ripe fruit flesh	no	mature	0.767622
SRR5405143	ripe fruit peel	no	mature	2.92576
SRR6320572	ripe fruit peel	no	mature	0.994934
SRR7403504	fruit	uninfected	mature	0.188868
SRR7403506	fruit	uninfected	mature	0.558632
SRR7403507	fruit	uninfected	mature	0.521149
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.417764
SRR7403502	fruit	infected with penicillium expansum	mature	0.0807481
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0810692
SRR1613973	Central seeds	no	20DAPF	0.14194
SRR1613974	Central seeds	no	20DAPF	0.0417928
SRR1613975	Central seeds	no	20DAPF	0.11348
SRR1613976	Lateral seeds	no	20DAPF	0.149208
SRR1613977	Lateral seeds	no	20DAPF	0.126967
SRR1613978	Lateral seeds	no	20DAPF	0.106023
SRR3744786	stem	no	mature	0.882212
SRR3744787	stem	no	mature	0.686011
SRR3744772	stem	no	mature	0.839704
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.682526
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.798411
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.101308
SRR767660	leaf	uninfected	fully developed	0.397302
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.191039
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.172042
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.168875
SRR6308182	young leaf	no	immature leaves	0.41138
SRR3744769	leaf	no	mature	0.289495
SRR3744770	leaf	no	mature	0.509038
SRR3744771	leaf	no	mature	0.401409
SRR5405145	leaf	no	mature	0.698456
SRR6320561	leaf	no	mature	0.512506