Gene detail

Detail information of MD08G1176400 Annotation

Gene ID	Annotation
MD08G1176400	Galactose oxidase/kelch repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0372

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1176400	mRNA	Chr08	21395642	21398438	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	F-box

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G22040.1	1	Galactose oxidase/kelch repeat superfamily protein
Prunus persica	Prupe.1G510200.4.p	1	Galactose oxidase/kelch repeat superfamily protein
Prunus persica	Prupe.1G510200.2.p	1	Galactose oxidase/kelch repeat superfamily protein
Prunus persica	Prupe.1G510200.3.p	1	Galactose oxidase/kelch repeat superfamily protein
Prunus persica	Prupe.1G510200.1.p	1	Galactose oxidase/kelch repeat superfamily protein
Pyrus communis	PCP004320.1	1	-
Pyrus x bretschneideri	Pbr039305.1	1	-
Rosa multiflora	Rmu_sc0005978.1_g000008.1	1	-
Rosa multiflora	Rmu_sc0005008.1_g000006.1	1	-
Rosa multiflora	Rmu_sc0012732.1_g000003.1	0.966	-
Rubus occidentalis	Ro05_G22083	1	-
Fragaria vesca	mrna31295.1	1	Galactose oxidase/kelch repeat superfamily protein
Vitis vinifera	GSVIVT01008973001	1	Galactose oxidase/kelch repeat superfamily protein
Populus trichocarpa	Potri.005G170000.1	1	Galactose oxidase/kelch repeat superfamily protein
Populus trichocarpa	Potri.002G091900.1	0.688	Galactose oxidase/kelch repeat superfamily protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.29	F-box	45	83	9.50E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.59988
SRR5252888	dormant buds	no	dormant buds(0 month)	8.64783
SRR5252889	dormant buds	no	dormant buds(0 month)	7.52599
SRR5252886	dormant buds	no	dormant buds(1 months)	3.60713
SRR5252887	dormant buds	no	dormant buds(1 months)	3.94984
SRR5252884	dormant buds	no	dormant buds(2 months)	2.22632
SRR5252882	dormant buds	no	dormant buds(3 months)	1.95377
SRR5252883	dormant buds	no	dormant buds(3 months)	3.19344
SRR5252880	dormant buds	no	dormant buds(4 months)	4.08545
SRR5252881	dormant buds	no	dormant buds(4 months)	3.45254
SRR5252878	bud break	no	bud break	5.36398
SRR5252879	bud break	no	bud break	3.02531
SRR3744766	flower	no	mature	2.30816
SRR3744767	flower	no	mature	2.30669
SRR3744768	flower	no	mature	1.61666
SRR6308190	stigmas	no	open flowers	0.96321
SRR6308181	styles	no	open flowers	1.84878
SRR6308188	filaments	no	open flowers	0.765317
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.18521
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.654452
SRR6308194	sepals	no	open flowers	2.77479
SRR6308193	receptacles	no	open flowers	1.89686
SRR6308189	ovaries	no	open flowers	2.51831
SRR3384922	fruit	no	1 week after full bloom	5.05158
SRR3384921	fruit	no	2 week after full bloom	7.9192
SRR3384920	fruit	no	3 week after full bloom	6.72396
SRR3384919	fruit	no	4 week after full bloom	5.71346
SRR3384923	fruit	no	5 week after full bloom	4.26653
SRR3384918	fruit	no	6 week after full bloom	4.10002
SRR3384917	fruit	no	8 week after full bloom	3.34064
SRR3384916	fruit	no	10 week after full bloom	4.18749
SRR3384915	fruit	no	12 week after full bloom	3.24301
SRR3384914	fruit	no	14 week after full bloom	2.40263
SRR3384913	fruit	no	16 week after full bloom	2.72699
SRR3384912	fruit	no	18 week after full bloom	3.09028
SRR3384911	fruit	no	19 week after full bloom	3.51968
SRR3384910	fruit	no	20 week after full bloom	4.49632
SRR768128	whole fruit	no	25 days post anthesis	5.61267
SRR768129	whole fruit	no	35 days post anthesis	4.49305
SRR768130	whole fruit	no	60 days post anthesis	6.95356
SRR768131	whole fruit	no	87 days post anthesis	4.72514
SRR7343308	immature fruit flesh	no	immature	7.7159
SRR7343309	immature fruit flesh	no	immature	7.69788
SRR6320494	ripe fruit flesh	no	mature	3.2044
SRR5405143	ripe fruit peel	no	mature	4.73302
SRR6320572	ripe fruit peel	no	mature	1.92784
SRR7403504	fruit	uninfected	mature	3.02411
SRR7403506	fruit	uninfected	mature	2.65785
SRR7403507	fruit	uninfected	mature	2.33646
SRR7403500	fruit	infected with penicillium expansum	mature	13.1933
SRR7403501	fruit	infected with penicillium expansum	mature	14.6608
SRR7403508	fruit	infected with penicillium expansum	mature	13.1107
SRR7403502	fruit	infected with penicillium expansum	mature	8.6884
SRR7403503	fruit	infected with penicillium expansum	mature	9.12662
SRR7403505	fruit	infected with penicillium expansum	mature	8.93064
SRR1613973	Central seeds	no	20DAPF	9.79859
SRR1613974	Central seeds	no	20DAPF	9.41388
SRR1613975	Central seeds	no	20DAPF	8.48412
SRR1613976	Lateral seeds	no	20DAPF	9.01995
SRR1613977	Lateral seeds	no	20DAPF	9.16282
SRR1613978	Lateral seeds	no	20DAPF	8.18744
SRR3744786	stem	no	mature	4.50989
SRR3744787	stem	no	mature	4.16484
SRR3744772	stem	no	mature	4.88238
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.07714
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.70503
SRR1089478	leaf	Virus-free	plantlets	3.68796
SRR1089477	leaf	ASGV-infected	plantlets	4.16103
SRR767660	leaf	uninfected	fully developed	2.80616
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.66303
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	13.1811
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.75521
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.53894
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.31239
SRR6308182	young leaf	no	immature leaves	2.17742
SRR3744769	leaf	no	mature	3.22433
SRR3744770	leaf	no	mature	3.34632
SRR3744771	leaf	no	mature	2.76598
SRR5405145	leaf	no	mature	2.68391
SRR6320561	leaf	no	mature	3.95833