Gene detail

Detail information of MD08G1208000 Annotation

Gene ID	Annotation
MD08G1208000	Phosphoglycerate mutase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0523	intra-Golgi vesicle-mediated transport positive regulation of calcium ion transport protein import into peroxisome matrix lithium ion transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1208000	mRNA	Chr08	27047664	27054451	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G540200.1.p	1	Phosphoglycerate mutase family protein
Prunus persica	Prupe.1G540200.3.p	0.949	Phosphoglycerate mutase family protein
Pyrus communis	PCP043717.1	1	-
Pyrus x bretschneideri	Pbr001647.1	1	-
Rosa multiflora	Rmu_sc0002061.1_g000001.1	1	-
Rubus occidentalis	Ro05_G15965	1	-
Fragaria vesca	mrna26894.1	1	Phosphoglycerate mutase family protein
Vitis vinifera	GSVIVT01009232001	1	Phosphoglycerate mutase family protein
Solanum lycopersicum	Solyc04g076830.2.1	1	Phosphoglycerate mutase family protein
Populus trichocarpa	Potri.002G108500.1	1	Phosphoglycerate mutase family protein
Nicotiana benthamiana	Niben101Scf05837g06004.1	1	Phosphoglycerate mutase-like protein 1
Oryza sativa	LOC_Os04g01230.1	1	"phosphoglycerate mutase, putative, expressed"
Zea mays	GRMZM2G160184_P01	1	Phosphoglycerate mutase-like protein;

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00300.18	His_Phos_1	69	141	8.20E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	12.329
SRR5252888	dormant buds	no	dormant buds(0 month)	8.67455
SRR5252889	dormant buds	no	dormant buds(0 month)	10.1778
SRR5252886	dormant buds	no	dormant buds(1 months)	10.0304
SRR5252887	dormant buds	no	dormant buds(1 months)	13.0626
SRR5252884	dormant buds	no	dormant buds(2 months)	10.0708
SRR5252882	dormant buds	no	dormant buds(3 months)	6.97417
SRR5252883	dormant buds	no	dormant buds(3 months)	7.66505
SRR5252880	dormant buds	no	dormant buds(4 months)	3.84015
SRR5252881	dormant buds	no	dormant buds(4 months)	6.59341
SRR5252878	bud break	no	bud break	8.12791
SRR5252879	bud break	no	bud break	10.1396
SRR3744766	flower	no	mature	28.3192
SRR3744767	flower	no	mature	26.8852
SRR3744768	flower	no	mature	27.1121
SRR6308190	stigmas	no	open flowers	17.7354
SRR6308181	styles	no	open flowers	16.3146
SRR6308188	filaments	no	open flowers	15.7668
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	29.3416
SRR6308192	pollen	no	open flowers	89.6531
SRR6308191	petals	no	open flowers	22.5217
SRR6308194	sepals	no	open flowers	14.7899
SRR6308193	receptacles	no	open flowers	20.2545
SRR6308189	ovaries	no	open flowers	13.5504
SRR3384922	fruit	no	1 week after full bloom	11.5387
SRR3384921	fruit	no	2 week after full bloom	8.16412
SRR3384920	fruit	no	3 week after full bloom	8.79805
SRR3384919	fruit	no	4 week after full bloom	9.21846
SRR3384923	fruit	no	5 week after full bloom	12.0188
SRR3384918	fruit	no	6 week after full bloom	9.60171
SRR3384917	fruit	no	8 week after full bloom	11.8171
SRR3384916	fruit	no	10 week after full bloom	14.0721
SRR3384915	fruit	no	12 week after full bloom	10.5955
SRR3384914	fruit	no	14 week after full bloom	12.8169
SRR3384913	fruit	no	16 week after full bloom	13.1676
SRR3384912	fruit	no	18 week after full bloom	13.2932
SRR3384911	fruit	no	19 week after full bloom	12.0913
SRR3384910	fruit	no	20 week after full bloom	18.0907
SRR768128	whole fruit	no	25 days post anthesis	7.51769
SRR768129	whole fruit	no	35 days post anthesis	5.28057
SRR768130	whole fruit	no	60 days post anthesis	11.0979
SRR768131	whole fruit	no	87 days post anthesis	10.1368
SRR7343308	immature fruit flesh	no	immature	13.9677
SRR7343309	immature fruit flesh	no	immature	12.9436
SRR6320494	ripe fruit flesh	no	mature	28.611
SRR5405143	ripe fruit peel	no	mature	33.0578
SRR6320572	ripe fruit peel	no	mature	18.1792
SRR7403504	fruit	uninfected	mature	26.7464
SRR7403506	fruit	uninfected	mature	24.6559
SRR7403507	fruit	uninfected	mature	24.2193
SRR7403500	fruit	infected with penicillium expansum	mature	42.8816
SRR7403501	fruit	infected with penicillium expansum	mature	44.8203
SRR7403508	fruit	infected with penicillium expansum	mature	44.7511
SRR7403502	fruit	infected with penicillium expansum	mature	38.4063
SRR7403503	fruit	infected with penicillium expansum	mature	35.5857
SRR7403505	fruit	infected with penicillium expansum	mature	32.3896
SRR1613973	Central seeds	no	20DAPF	11.9706
SRR1613974	Central seeds	no	20DAPF	12.5495
SRR1613975	Central seeds	no	20DAPF	12.9663
SRR1613976	Lateral seeds	no	20DAPF	13.6389
SRR1613977	Lateral seeds	no	20DAPF	12.3188
SRR1613978	Lateral seeds	no	20DAPF	12.524
SRR3744786	stem	no	mature	12.2354
SRR3744787	stem	no	mature	13.1062
SRR3744772	stem	no	mature	11.3068
SRX765691	seedling shoot apex	no	4-6 week old seedling	10.0256
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.409
SRR1089478	leaf	Virus-free	plantlets	11.5708
SRR1089477	leaf	ASGV-infected	plantlets	11.6596
SRR767660	leaf	uninfected	fully developed	9.87128
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.83131
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.53064
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	12.7522
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	8.70186
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.45679
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.6286
SRR6308182	young leaf	no	immature leaves	11.2716
SRR3744769	leaf	no	mature	16.9776
SRR3744770	leaf	no	mature	16.9594
SRR3744771	leaf	no	mature	17.8595
SRR5405145	leaf	no	mature	11.3622
SRR6320561	leaf	no	mature	7.22396