Gene detail

Detail information of MD08G1216500 Annotation

Gene ID	Annotation
MD08G1216500	K-box region and MADS-box transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1216500	mRNA	Chr08	27928774	27937925	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MIKC
Epigenetic Regulators	FLCP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G09960.1	1	AGL11;STK\|AGAMOUS-like 11;SEEDSTICK
Arabidopsis thaliana	AT4G09960.3	1	AGL11;STK\|AGAMOUS-like 11;SEEDSTICK
Arabidopsis thaliana	AT4G09960.4	0.944	AGL11;STK\|AGAMOUS-like 11;SEEDSTICK
Arabidopsis thaliana	AT4G09960.2	0.667	AGL11;STK\|AGAMOUS-like 11;SEEDSTICK
Prunus persica	Prupe.1G549600.3.p	1	K-box region and MADS-box transcription factor family protein
Prunus persica	Prupe.1G549600.1.p	0.865	K-box region and MADS-box transcription factor family protein
Prunus persica	Prupe.1G549600.2.p	0.865	K-box region and MADS-box transcription factor family protein
Rubus occidentalis	Ro05_G22454	1	-
Fragaria vesca	mrna25070.1	1	K-box region and MADS-box transcription factor family protein
Vitis vinifera	GSVIVT01025945001	1	K-box region and MADS-box transcription factor family protein
Solanum lycopersicum	Solyc11g028020.1.1	1	K-box region and MADS-box transcription factor family protein
Solanum lycopersicum	Solyc02g071730.2.1	1	K-box region and MADS-box transcription factor family protein
Solanum lycopersicum	Solyc02g084630.2.1	1	K-box region and MADS-box transcription factor family protein
Populus trichocarpa	Potri.019G077200.4	1	K-box region and MADS-box transcription factor family protein
Populus trichocarpa	Potri.013G104900.1	0.657	K-box region and MADS-box transcription factor family protein
Nicotiana benthamiana	Niben101Scf00320g01005.1	1	MADS-box transcription factor 3
Nicotiana benthamiana	Niben101Scf02073g09008.1	0.938	MADS-box transcription factor 3
Oryza sativa	LOC_Os12g10540.2	1	"OsMADS13 - MADS-box family gene with MIKCc type-box, expressed"
Zea mays	GRMZM2G018589_P01	1	K-box region and MADS-box transcription factor family protein

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
K09264	"MADS-box transcription factor, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.14	SRF-TF	10	57	1.80E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.193407
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0902715
SRR5252886	dormant buds	no	dormant buds(1 months)	1.5838
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0918083
SRR5252880	dormant buds	no	dormant buds(4 months)	0.336342
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0933313
SRR5252878	bud break	no	bud break	0.167503
SRR5252879	bud break	no	bud break	0.464357
SRR3744766	flower	no	mature	9.69031
SRR3744767	flower	no	mature	9.59264
SRR3744768	flower	no	mature	9.0009
SRR6308190	stigmas	no	open flowers	3.18281
SRR6308181	styles	no	open flowers	5.58009
SRR6308188	filaments	no	open flowers	9.60282
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	42.5255
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.17027
SRR6308194	sepals	no	open flowers	0.283596
SRR6308193	receptacles	no	open flowers	35.3906
SRR6308189	ovaries	no	open flowers	0.642844
SRR3384922	fruit	no	1 week after full bloom	62.8711
SRR3384921	fruit	no	2 week after full bloom	43.9747
SRR3384920	fruit	no	3 week after full bloom	0.601483
SRR3384919	fruit	no	4 week after full bloom	3.12571
SRR3384923	fruit	no	5 week after full bloom	0.132112
SRR3384918	fruit	no	6 week after full bloom	1.02948
SRR3384917	fruit	no	8 week after full bloom	0.106164
SRR3384916	fruit	no	10 week after full bloom	0.551664
SRR3384915	fruit	no	12 week after full bloom	0.0815904
SRR3384914	fruit	no	14 week after full bloom	0.0791311
SRR3384913	fruit	no	16 week after full bloom	0.186406
SRR3384912	fruit	no	18 week after full bloom	0.174933
SRR3384911	fruit	no	19 week after full bloom	0.167781
SRR3384910	fruit	no	20 week after full bloom	0.0656839
SRR768128	whole fruit	no	25 days post anthesis	44.9077
SRR768129	whole fruit	no	35 days post anthesis	30.7961
SRR768130	whole fruit	no	60 days post anthesis	19.1878
SRR768131	whole fruit	no	87 days post anthesis	1.18168
SRR7343308	immature fruit flesh	no	immature	1.8657
SRR7343309	immature fruit flesh	no	immature	0.931438
SRR6320494	ripe fruit flesh	no	mature	0.443823
SRR5405143	ripe fruit peel	no	mature	23.7632
SRR6320572	ripe fruit peel	no	mature	5.73828
SRR7403504	fruit	uninfected	mature	3.6735
SRR7403506	fruit	uninfected	mature	3.18757
SRR7403507	fruit	uninfected	mature	2.46828
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.120916
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	476.497
SRR1613974	Central seeds	no	20DAPF	513.55
SRR1613975	Central seeds	no	20DAPF	492.623
SRR1613976	Lateral seeds	no	20DAPF	483.818
SRR1613977	Lateral seeds	no	20DAPF	498.282
SRR1613978	Lateral seeds	no	20DAPF	478.22
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.145156
SRR3744772	stem	no	mature	0.0723858
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.370493
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	0.151071
SRR1089477	leaf	ASGV-infected	plantlets	0.82029
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.596234
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.390623
SRR6308182	young leaf	no	immature leaves	0.189862
SRR3744769	leaf	no	mature	0.186981
SRR3744770	leaf	no	mature	0.237112
SRR3744771	leaf	no	mature	0.272848
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0