Gene detail

Detail information of MD08G1234100 Annotation

Gene ID	Annotation
MD08G1234100	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1234100	mRNA	Chr08	30074447	30083500	-

Sequences

CDS:

MD08G1234100

GCGGCAGAGAGTCCCTCCCCACAAAACCTTAAGAAAAAAAACCCTCGCACTACAACAAAAAGCAACGCCTCCATTTCCCCCTCGCTGGAAACTTGCCCCAACCGAAAGCACGAACGATACCAGAAACCCTAGATATACAGACAGAGCGAGAGAGAGACTAGAGCAAACGACATGTCGCAGTCACTGGAGCTCTTGCTGATACAATTCCTGATGCCGGACAACGACGCCCGGCGGCAGGCGGAGGACCAGATAAAGCGCTTGGCCAAGGACCCTCAGGTGGTACCCGCGCTCGTACAGCACCTCCGCACCGCCAAGACGCCGAACGTGAGGCAATTAGCGGCAGTGCTTCTGAGGAAGAAGATCACCGGACACTGGGCCAAGCTCTCACCTCAAATTAAACACCTCGTTAAGCAGTCCCTCATTGAGAGCATCACAATGGAGCACAGTCCGCCGGTGAGGCGAGCCAGTGCCAATGTGGTTAGTGTTGTCGCAAAATATGCAGTCCCGGCTGGAGAATGGCCGGATTTGTTGCCCTTTCTGTTTCAATGTAGTCAGAGTGCACAGGAGGAACATAGAGAGGTGGCGTTGATATTGTTCAGCTCTTTGACTGAAACAATAGGGAATACGTTTCGGCCACATTTCGCAGATTTGCAAGCTCTTCTTCTGAAATGCCTGCAGGATGAGACAAGCAACCGCGTCAGAGTTGCTGCGCTCAAGGCCGTAGGGTCTTTTCTGGAATTCACTCATGATGGGGTTGAAGTGGTGAAGTTTCGGGAATTTATACCTAGCATCTTAAATGTATCAAGACAATGCCTTGCAGCTGGCGAGGAGGATGTTGCTATTATTGCTTTTGAAATTTTTGATGAGTTGATTGAATCTCCCGCACCTCTTCTTGGTGAATCTGTTAAATCCATTGTGCAATTCTCTCTTGAAGTTTGTTCAACTCAAAGTTTAGAATCTAATACACGTCATCAGGCAATTCAGATAGTTTCATGGCTAGCAAAGTATAAATCCAATTCCCTCAAAAAGCATAAGCTGGTCATCCCTATTCTGCAAGTTATGTGCCCATTGCTTGCAGAATCAAATGATGAAGATAAGGATGATGATCTTGCTCCAGATCGAGCTGCTGCAGAAGTTATTGATACTATGGCTTTGAACATACCAAAGCATGTTTTCCACCCTGTCTTTGAATTTTCTTCTTTAAGCAGTAAAAATGCAAATCCAAAATATCGGGAAGCGTCTGTTACCGCTTTAGGTGTCATTTCAGAGGGTTGTTTGGAGATGATAAAAGATAAGTTGGATCCAGTTCTTCATATTGTCTTAGGCGCTCTGAGAGATCCGGAGGAAATGGTTAGGGGGGCTGCATCATTTGCATTGGGTCAGTTTGCAGAGCATTTGCAGCCGGAAATTGTTTCCCACTATCAAAGTGTACTTCCCTGCATTTTGATTGCCCTTGAGGATGCATCTGACGAAGTGAAGGAGAAGTCATATTATGCTTTGGCAGCATTTTGTGACAACATGGGTGAGGAAATTCTTCCATTCCTTGATCCGTTGATGGGAAAACTACTGGGGGCCCTCCATAATAGCCCTCGTAATTTGCAGGAGACATGCATGTCTGCGATTGGTTCGGTTGCATCTGCGGCAGAACAGGCATTCATTCCGTATGCTGAAAGGGTTTTGGAGTTGATGAAAAGTTTCTTGGTGCTTAGTAATGATGAGGATCTTCGTTCACGAGCAAGAGCTACTGAATTAGTTGGAATTGTTGCAATGTGTGTGGGGAGAACTAGGATGGAACCAATTTTACCCCCTTATATAGAAGCTGCAATTTCTGGTTTTGGATTGGATTTCAGTGAACTTCGGGAGTATATTCATGGATTCTTTAGCAATGTGGTAGAAATTTTGGATGACAGCTTTATACAGTATCTTCCTCATGTTGTACCCCTGGCGTTTTCTTCCTGCAATCTTGATGATGGAGCTGCAGTGGACATCGATGAGTCTGATGATGAAAATATTAATGGATTTGGTGGAGTTTCATCTGATGATGAAGCTCATGATGAGCCAAGAGTACGAAATATCAGCGTAAGAACAGGAGTTTTAGATGAAAAGGCAGCTGCAACTCAAGCTCTTGGCTTATTTGCACTACATACGAAGGCCTCATATGCACCCTATTTGGAGGAATCATTTAAGATCCTAGTACGACACTCAGGGTATTTTCATGAAGATGTTCGGCTTCAGGCAATCATTTCTCTGAAACATATTTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGAAGGACAAGCAAGGGCTAAGGAAATTCTGGATACTGTGATGAACACTTATATCAAGACTATGACTGAAGATGATGACAAGGAAGTTGTTGCTCAAGCTTGTATGAGCCTTGCTGATATCATCAAAGATTATGGATATATGGCTGTTGAGCCTTATGTACCACGGGTTGTTGATGCTACTTTGGTACTGCTTCGGGAGGAATCAGCTTGTCAGCAGACAGAATCTGATGATGAAATTGATGATGATGATGTTGTACATGATGAAGAACTTATGGATGCAGTTTCTGACCTTCTTCCTGCTTTTGCAAAGTCAATGGGTCCTCATTTTGCACCTATTTTTGCTACGCTATTTGAACCTTTAATGAAATTTGCGAGAGCATCGCAGCCACTGCAAGATCGGACAATGGTTGTTGCCTGCCTTGCTGAAGTTGCTCAAGACATGGGTGCTCCAATTGCTGGATATGTCGATAGGGTGATGCCCTTGGTAATCAAAGAACTAGCATCCTCAGACGCAACCAATAGAAGGAATGCTGCATTTTGTGTTGGAGAGCTGTGCAAAAATGGGGGTGAGGGGACGTTGAAATACTATGGTGATATATTGCGTGGACTTTACCCACTATTTGGGGAATCTGAGCCAGATGATGCTGTCAGGGATAACGCAGCTGGTGCAGTGGCAAGAATGATAATGGTGCACCCTGAATCTATCCCATTGAATCAGGTACTTCCTGTTTTCTTGAAGGTTCTTCCACTAAAAGAAGATCGTGAAGAGTCCATGACGGTGTATAGTTGCGTCTCTACTCTTGTTTTATCATCTAATGCCCAGATCCTTTCTCTAGTCCCAGATCTGGTTAATGTATTTGCTCAAGTTGTGGCATCACCAGTTGAAACTCCTGAAGTAAAAGCACAAATCGGAAGAGCTTTTGCTCACCTGATTTCACTCTATGGCCAACAAATGCAGCCCCTTTTGAGTAACCTCTCCCCTGCTTATGCAAATGCCCTAGCTGCATTTGTCCCGAAAAGCTGATTCGGGGTGAGCCAGTGACTTGCCTTCTCGTTGCATTTGCTCCAGGAAGCTGTTCGATTGGGCCTGTGGATTGTGATTCCTCACCAATAGTTTCTACCCGCCTTTTTTGCTGAGATTCTTTTCCAATTCAAAGACGGTGGTGTGTTGTTCCCAGGTTTTATAGATGGGTTGGCTGAAGTCTTGGAGGAGGACATCGTTCTATAAGGTGATCCTCCTCCTATTACCACCTCCATTTTTCAAGGCTGGTGATACTGCTTTTTCTTCTTCTTCCTTATTTTCCTGTGGTATCTTTTTCCCCCCGAATCTTCTTTCCATTCTCCGGTCTGCTTGGAGCGTTCGTGTGCATTCTTTGATACTTTTATGTGCGTGATTTTATTATTTGTTTGAGTATCATGGTTGTCCGCTGTCGGGTTTCCATAGGTTTGAAAATTTCGCCTTTCCCCTCACAGAATTAGTGAAGATGATGCATACCCATAGTATATCGTCATGTGTAACGCAGCGTTGTCAAGTTATTGCTTGCAGAATCAAATTGCCAACGGTAAAATTGGCGCTTTCGATTTTCAGCAGTTATAGTAACAAGGTTACTTTTGTGTTATTTAAGAAATGTGTTTTGATATGTACTAATTTTCAGTTGGGACTTGAGTACGGTTAATTTATGTTTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G27640.1	1	ARM repeat superfamily protein
Prunus persica	Prupe.1G571100.1.p	1	ARM repeat superfamily protein
Pyrus communis	PCP015868.1	1	-
Pyrus communis	PCP025303.1	1	-
Pyrus x bretschneideri	Pbr026519.1	1	-
Rosa multiflora	Rmu_sc0005834.1_g000014.1	1	-
Rubus occidentalis	Ro05_G31324	1	-
Fragaria vesca	mrna11065.1	1	ARM repeat superfamily protein
Vitis vinifera	GSVIVT01022879001	1	ARM repeat superfamily protein
Solanum lycopersicum	Solyc01g104070.2.1	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.008G085800.1	1	ARM repeat superfamily protein
Nicotiana benthamiana	Niben101Scf02122g01006.1	1	Importin subunit beta-4
Nicotiana benthamiana	Niben101Scf03468g02008.1	0.6	Importin subunit beta-4
Zea mays	GRMZM2G408305_P01	1	ARM repeat superfamily protein

Gene Ontology

GO term	Description	Category
GO:0006886	intracellular protein transport	biological_process
GO:0008536	Ran GTPase binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.15	IBN_N	23	87	4.40E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.55203
SRR5252888	dormant buds	no	dormant buds(0 month)	10.2266
SRR5252889	dormant buds	no	dormant buds(0 month)	11.1207
SRR5252886	dormant buds	no	dormant buds(1 months)	10.0045
SRR5252887	dormant buds	no	dormant buds(1 months)	10.2096
SRR5252884	dormant buds	no	dormant buds(2 months)	13.3901
SRR5252882	dormant buds	no	dormant buds(3 months)	10.0828
SRR5252883	dormant buds	no	dormant buds(3 months)	10.9638
SRR5252880	dormant buds	no	dormant buds(4 months)	12.8109
SRR5252881	dormant buds	no	dormant buds(4 months)	10.7703
SRR5252878	bud break	no	bud break	12.0441
SRR5252879	bud break	no	bud break	10.2736
SRR3744766	flower	no	mature	7.63038
SRR3744767	flower	no	mature	7.97284
SRR3744768	flower	no	mature	7.29785
SRR6308190	stigmas	no	open flowers	3.57112
SRR6308181	styles	no	open flowers	3.63363
SRR6308188	filaments	no	open flowers	5.08874
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.54075
SRR6308192	pollen	no	open flowers	3.34302
SRR6308191	petals	no	open flowers	4.50911
SRR6308194	sepals	no	open flowers	3.31326
SRR6308193	receptacles	no	open flowers	3.65924
SRR6308189	ovaries	no	open flowers	3.21209
SRR3384922	fruit	no	1 week after full bloom	1.86383
SRR3384921	fruit	no	2 week after full bloom	1.9531
SRR3384920	fruit	no	3 week after full bloom	1.13389
SRR3384919	fruit	no	4 week after full bloom	1.86813
SRR3384923	fruit	no	5 week after full bloom	2.00902
SRR3384918	fruit	no	6 week after full bloom	1.95921
SRR3384917	fruit	no	8 week after full bloom	2.53506
SRR3384916	fruit	no	10 week after full bloom	2.51327
SRR3384915	fruit	no	12 week after full bloom	2.29691
SRR3384914	fruit	no	14 week after full bloom	2.60559
SRR3384913	fruit	no	16 week after full bloom	2.17872
SRR3384912	fruit	no	18 week after full bloom	2.48431
SRR3384911	fruit	no	19 week after full bloom	2.88882
SRR3384910	fruit	no	20 week after full bloom	1.83261
SRR768128	whole fruit	no	25 days post anthesis	2.82378
SRR768129	whole fruit	no	35 days post anthesis	1.52418
SRR768130	whole fruit	no	60 days post anthesis	2.11485
SRR768131	whole fruit	no	87 days post anthesis	4.60977
SRR7343308	immature fruit flesh	no	immature	4.68064
SRR7343309	immature fruit flesh	no	immature	4.55045
SRR6320494	ripe fruit flesh	no	mature	3.49334
SRR5405143	ripe fruit peel	no	mature	5.07631
SRR6320572	ripe fruit peel	no	mature	4.43138
SRR7403504	fruit	uninfected	mature	4.5778
SRR7403506	fruit	uninfected	mature	4.64934
SRR7403507	fruit	uninfected	mature	4.74553
SRR7403500	fruit	infected with penicillium expansum	mature	5.18878
SRR7403501	fruit	infected with penicillium expansum	mature	5.07695
SRR7403508	fruit	infected with penicillium expansum	mature	5.1849
SRR7403502	fruit	infected with penicillium expansum	mature	7.00341
SRR7403503	fruit	infected with penicillium expansum	mature	6.32101
SRR7403505	fruit	infected with penicillium expansum	mature	6.3447
SRR1613973	Central seeds	no	20DAPF	2.8356
SRR1613974	Central seeds	no	20DAPF	2.97733
SRR1613975	Central seeds	no	20DAPF	2.73915
SRR1613976	Lateral seeds	no	20DAPF	2.34464
SRR1613977	Lateral seeds	no	20DAPF	2.39242
SRR1613978	Lateral seeds	no	20DAPF	2.78192
SRR3744786	stem	no	mature	7.14736
SRR3744787	stem	no	mature	7.06611
SRR3744772	stem	no	mature	7.78455
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.92468
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.63455
SRR1089478	leaf	Virus-free	plantlets	3.17825
SRR1089477	leaf	ASGV-infected	plantlets	3.0891
SRR767660	leaf	uninfected	fully developed	1.04943
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.2339
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.32871
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.501989
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.45666
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.8957
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.33777
SRR6308182	young leaf	no	immature leaves	6.31959
SRR3744769	leaf	no	mature	8.00339
SRR3744770	leaf	no	mature	9.33952
SRR3744771	leaf	no	mature	9.21881
SRR5405145	leaf	no	mature	4.28289
SRR6320561	leaf	no	mature	2.77059