Gene detail

Detail information of MD08G1238700 Annotation

Gene ID	Annotation
MD08G1238700	magnesium transporter 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1238700	mRNA	Chr08	30564802	30568491	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	MIT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G58970.1	1	MGT6;MRS2-4\|magnesium transporter 6;
Pyrus x bretschneideri	Pbr026553.1	1	-
Oryza sativa	LOC_Os10g39790.3	1	"CorA-like magnesium transporter protein, putative, expressed"
Oryza sativa	LOC_Os03g04480.1	1	"CorA-like magnesium transporter protein, putative, expressed"
Zea mays	GRMZM2G453832_P01	1	-
Zea mays	GRMZM2G145794_P01	0.794	-

Gene Ontology

GO term	Description	Category
GO:0015693	magnesium ion transport	biological_process
GO:0015095	magnesium ion transmembrane transporter activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.10382
SRR5252888	dormant buds	no	dormant buds(0 month)	2.51195
SRR5252889	dormant buds	no	dormant buds(0 month)	0.121248
SRR5252886	dormant buds	no	dormant buds(1 months)	1.59546
SRR5252887	dormant buds	no	dormant buds(1 months)	0.706527
SRR5252884	dormant buds	no	dormant buds(2 months)	1.57965
SRR5252882	dormant buds	no	dormant buds(3 months)	0.565824
SRR5252883	dormant buds	no	dormant buds(3 months)	0.123312
SRR5252880	dormant buds	no	dormant buds(4 months)	1.24233
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	1.2374
SRR5252879	bud break	no	bud break	0.498961
SRR3744766	flower	no	mature	0.165764
SRR3744767	flower	no	mature	0.0828947
SRR3744768	flower	no	mature	0.020833
SRR6308190	stigmas	no	open flowers	0.988215
SRR6308181	styles	no	open flowers	0.309027
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.478782
SRR6308192	pollen	no	open flowers	0.681025
SRR6308191	petals	no	open flowers	0.495824
SRR6308194	sepals	no	open flowers	0.0961077
SRR6308193	receptacles	no	open flowers	0.306584
SRR6308189	ovaries	no	open flowers	0.373723
SRR3384922	fruit	no	1 week after full bloom	0.423773
SRR3384921	fruit	no	2 week after full bloom	0.344031
SRR3384920	fruit	no	3 week after full bloom	1.16121
SRR3384919	fruit	no	4 week after full bloom	0.699646
SRR3384923	fruit	no	5 week after full bloom	0.266143
SRR3384918	fruit	no	6 week after full bloom	0.543165
SRR3384917	fruit	no	8 week after full bloom	0.712901
SRR3384916	fruit	no	10 week after full bloom	0.463058
SRR3384915	fruit	no	12 week after full bloom	0.602674
SRR3384914	fruit	no	14 week after full bloom	0.478234
SRR3384913	fruit	no	16 week after full bloom	0.500693
SRR3384912	fruit	no	18 week after full bloom	0.176203
SRR3384911	fruit	no	19 week after full bloom	0.450665
SRR3384910	fruit	no	20 week after full bloom	0.264643
SRR768128	whole fruit	no	25 days post anthesis	1.0201
SRR768129	whole fruit	no	35 days post anthesis	0.630123
SRR768130	whole fruit	no	60 days post anthesis	0.939076
SRR768131	whole fruit	no	87 days post anthesis	0.353425
SRR7343308	immature fruit flesh	no	immature	0.625894
SRR7343309	immature fruit flesh	no	immature	0.624569
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.349396
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.705878
SRR7403506	fruit	uninfected	mature	0.683519
SRR7403507	fruit	uninfected	mature	0.295114
SRR7403500	fruit	infected with penicillium expansum	mature	0.456094
SRR7403501	fruit	infected with penicillium expansum	mature	0.225611
SRR7403508	fruit	infected with penicillium expansum	mature	0.650565
SRR7403502	fruit	infected with penicillium expansum	mature	0.6916
SRR7403503	fruit	infected with penicillium expansum	mature	0.772461
SRR7403505	fruit	infected with penicillium expansum	mature	0.757473
SRR1613973	Central seeds	no	20DAPF	1.644
SRR1613974	Central seeds	no	20DAPF	1.82452
SRR1613975	Central seeds	no	20DAPF	1.47445
SRR1613976	Lateral seeds	no	20DAPF	1.86112
SRR1613977	Lateral seeds	no	20DAPF	1.39473
SRR1613978	Lateral seeds	no	20DAPF	1.84593
SRR3744786	stem	no	mature	0.0730921
SRR3744787	stem	no	mature	0.0482088
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.136165
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0715686
SRR1089478	leaf	Virus-free	plantlets	0.101818
SRR1089477	leaf	ASGV-infected	plantlets	0.315918
SRR767660	leaf	uninfected	fully developed	1.23933
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.522795
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.20933
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.395049
SRR6308182	young leaf	no	immature leaves	0.450592
SRR3744769	leaf	no	mature	0.049799
SRR3744770	leaf	no	mature	0.0262097
SRR3744771	leaf	no	mature	0.0774374
SRR5405145	leaf	no	mature	0.362547
SRR6320561	leaf	no	mature	0.13342