Gene detail

Detail information of MD09G1011700 Annotation

Gene ID	Annotation
MD09G1011700	Ribosomal protein L22p/L17e family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0337	plasmodesma elongation factor 1-alpha translation elongation factor activity translational elongation translation vacuole structural constituent of ribosome cytosolic large ribosomal subunit GTPase activity rRNA (adenine-N6 rRNA modification large subunit ribosomal protein L17e large subunit ribosomal protein L10Ae 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] small subunit ribosomal protein S5e calmodulin binding GTP binding nucleolus RNA binding cell fate specification

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1011700	mRNA	Chr09	765612	767804	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G67430.1	1	Ribosomal protein L22p/L17e family protein
Arabidopsis thaliana	AT1G27400.1	1	Ribosomal protein L22p/L17e family protein
Prunus persica	Prupe.3G305300.1.p	1	Ribosomal protein L22p/L17e family protein
Pyrus communis	PCP030796.1	1	-
Rosa multiflora	Rmu_sc0003512.1_g000017.1	1	-
Rubus occidentalis	Ro06_G03810	1	-
Fragaria vesca	mrna06339.1	1	Ribosomal protein L22p/L17e family protein
Vitis vinifera	GSVIVT01008528001	1	Ribosomal protein L22p/L17e family protein
Solanum lycopersicum	Solyc06g071870.2.1	1	Ribosomal protein L22p/L17e family protein
Populus trichocarpa	Potri.012G096600.1	1	Ribosomal protein L22p/L17e family protein
Populus trichocarpa	Potri.008G175500.1	1	Ribosomal protein L22p/L17e family protein
Populus trichocarpa	Potri.010G060400.1	0.791	Ribosomal protein L22p/L17e family protein
Populus trichocarpa	Potri.015G094400.1	0.62	Ribosomal protein L22p/L17e family protein
Nicotiana benthamiana	Niben101Scf10885g00015.1	1	50S ribosomal protein L22
Nicotiana benthamiana	Niben101Scf19230g01011.1	0.6	50S ribosomal protein L22
Oryza sativa	LOC_Os09g08430.1	1	"ribosomal protein L22, putative, expressed"
Zea mays	GRMZM2G148744_P01	1	-
Zea mays	GRMZM2G702426_P01	0.96	protein_coding

Gene Ontology

GO term	Description	Category
GO:0015934	large ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02880	large subunit ribosomal protein L17e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00237.15	Ribosomal_L22	41	176	6.50E-39

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	163.898
SRR5252888	dormant buds	no	dormant buds(0 month)	93.399
SRR5252889	dormant buds	no	dormant buds(0 month)	87.9771
SRR5252886	dormant buds	no	dormant buds(1 months)	87.6545
SRR5252887	dormant buds	no	dormant buds(1 months)	79.9298
SRR5252884	dormant buds	no	dormant buds(2 months)	114.883
SRR5252882	dormant buds	no	dormant buds(3 months)	96.018
SRR5252883	dormant buds	no	dormant buds(3 months)	107.875
SRR5252880	dormant buds	no	dormant buds(4 months)	144.511
SRR5252881	dormant buds	no	dormant buds(4 months)	132.038
SRR5252878	bud break	no	bud break	95.2267
SRR5252879	bud break	no	bud break	189.903
SRR3744766	flower	no	mature	60.4178
SRR3744767	flower	no	mature	61.8844
SRR3744768	flower	no	mature	62.1648
SRR6308190	stigmas	no	open flowers	51.1776
SRR6308181	styles	no	open flowers	72.7023
SRR6308188	filaments	no	open flowers	124.898
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	51.5222
SRR6308192	pollen	no	open flowers	36.7156
SRR6308191	petals	no	open flowers	119.668
SRR6308194	sepals	no	open flowers	79.3704
SRR6308193	receptacles	no	open flowers	143.742
SRR6308189	ovaries	no	open flowers	94.1598
SRR3384922	fruit	no	1 week after full bloom	204.515
SRR3384921	fruit	no	2 week after full bloom	182.112
SRR3384920	fruit	no	3 week after full bloom	114.256
SRR3384919	fruit	no	4 week after full bloom	117.385
SRR3384923	fruit	no	5 week after full bloom	90.6039
SRR3384918	fruit	no	6 week after full bloom	93.6358
SRR3384917	fruit	no	8 week after full bloom	89.985
SRR3384916	fruit	no	10 week after full bloom	91.7838
SRR3384915	fruit	no	12 week after full bloom	96.6262
SRR3384914	fruit	no	14 week after full bloom	88.323
SRR3384913	fruit	no	16 week after full bloom	93.407
SRR3384912	fruit	no	18 week after full bloom	88.2306
SRR3384911	fruit	no	19 week after full bloom	87.9205
SRR3384910	fruit	no	20 week after full bloom	66.4299
SRR768128	whole fruit	no	25 days post anthesis	89.8035
SRR768129	whole fruit	no	35 days post anthesis	118.205
SRR768130	whole fruit	no	60 days post anthesis	73.2065
SRR768131	whole fruit	no	87 days post anthesis	43.6018
SRR7343308	immature fruit flesh	no	immature	66.6557
SRR7343309	immature fruit flesh	no	immature	89.1978
SRR6320494	ripe fruit flesh	no	mature	44.5847
SRR5405143	ripe fruit peel	no	mature	88.918
SRR6320572	ripe fruit peel	no	mature	68.9886
SRR7403504	fruit	uninfected	mature	64.0161
SRR7403506	fruit	uninfected	mature	61.2783
SRR7403507	fruit	uninfected	mature	63.932
SRR7403500	fruit	infected with penicillium expansum	mature	108.084
SRR7403501	fruit	infected with penicillium expansum	mature	106.637
SRR7403508	fruit	infected with penicillium expansum	mature	114.52
SRR7403502	fruit	infected with penicillium expansum	mature	95.8781
SRR7403503	fruit	infected with penicillium expansum	mature	97.6633
SRR7403505	fruit	infected with penicillium expansum	mature	102.276
SRR1613973	Central seeds	no	20DAPF	191.67
SRR1613974	Central seeds	no	20DAPF	170.267
SRR1613975	Central seeds	no	20DAPF	180.378
SRR1613976	Lateral seeds	no	20DAPF	147.912
SRR1613977	Lateral seeds	no	20DAPF	168.425
SRR1613978	Lateral seeds	no	20DAPF	157.771
SRR3744786	stem	no	mature	75.8037
SRR3744787	stem	no	mature	80.3169
SRR3744772	stem	no	mature	76.9885
SRX765691	seedling shoot apex	no	4-6 week old seedling	126.58
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	122.994
SRR1089478	leaf	Virus-free	plantlets	66.8605
SRR1089477	leaf	ASGV-infected	plantlets	63.949
SRR767660	leaf	uninfected	fully developed	64.7507
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	65.9046
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	66.1949
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	98.1363
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	79.5735
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	58.9855
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	69.5948
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	68.0581
SRR6308182	young leaf	no	immature leaves	224.539
SRR3744769	leaf	no	mature	67.1684
SRR3744770	leaf	no	mature	65.3293
SRR3744771	leaf	no	mature	68.7731
SRR5405145	leaf	no	mature	37.7315
SRR6320561	leaf	no	mature	54.4691