Gene detail

Detail information of MD09G1022300 Annotation

Gene ID	Annotation
MD09G1022300	RAB GTPase homolog E1B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0257	fructokinase [EC:2.7.1.4] elongation factor Tu ribokinase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1022300	mRNA	Chr09	1341485	1342969	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G294300.1.p	1	RAB GTPase homolog E1B
Pyrus communis	PCP000300.1	1	-
Rubus occidentalis	Ro06_G03910	1	-
Fragaria vesca	mrna27963.1	1	RAB GTPase homolog E1B

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0003746	translation elongation factor activity	molecular_function
GO:0006414	translational elongation	biological_process

KEGG

KO	Description	Enzyme
K02358	elongation factor Tu	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.23	GTP_EFTU	95	296	1.90E-57
PF03144.21	GTP_EFTU_D2	320	388	4.10E-17
PF03143.13	GTP_EFTU_D3	394	492	8.00E-35

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.34874
SRR5252888	dormant buds	no	dormant buds(0 month)	7.14095
SRR5252889	dormant buds	no	dormant buds(0 month)	3.96806
SRR5252886	dormant buds	no	dormant buds(1 months)	4.86745
SRR5252887	dormant buds	no	dormant buds(1 months)	4.31095
SRR5252884	dormant buds	no	dormant buds(2 months)	4.25593
SRR5252882	dormant buds	no	dormant buds(3 months)	4.39401
SRR5252883	dormant buds	no	dormant buds(3 months)	2.66761
SRR5252880	dormant buds	no	dormant buds(4 months)	8.01875
SRR5252881	dormant buds	no	dormant buds(4 months)	6.04955
SRR5252878	bud break	no	bud break	7.61253
SRR5252879	bud break	no	bud break	6.64247
SRR3744766	flower	no	mature	7.66236
SRR3744767	flower	no	mature	7.53883
SRR3744768	flower	no	mature	8.02856
SRR6308190	stigmas	no	open flowers	4.97354
SRR6308181	styles	no	open flowers	7.86717
SRR6308188	filaments	no	open flowers	11.5661
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.55192
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	7.79443
SRR6308194	sepals	no	open flowers	4.68162
SRR6308193	receptacles	no	open flowers	9.50342
SRR6308189	ovaries	no	open flowers	7.30838
SRR3384922	fruit	no	1 week after full bloom	7.28713
SRR3384921	fruit	no	2 week after full bloom	10.496
SRR3384920	fruit	no	3 week after full bloom	19.3799
SRR3384919	fruit	no	4 week after full bloom	20.6985
SRR3384923	fruit	no	5 week after full bloom	27.7545
SRR3384918	fruit	no	6 week after full bloom	24.7063
SRR3384917	fruit	no	8 week after full bloom	42.1549
SRR3384916	fruit	no	10 week after full bloom	51.5262
SRR3384915	fruit	no	12 week after full bloom	43.7637
SRR3384914	fruit	no	14 week after full bloom	52.4662
SRR3384913	fruit	no	16 week after full bloom	63.3933
SRR3384912	fruit	no	18 week after full bloom	94.0915
SRR3384911	fruit	no	19 week after full bloom	67.8711
SRR3384910	fruit	no	20 week after full bloom	82.8435
SRR768128	whole fruit	no	25 days post anthesis	16.4019
SRR768129	whole fruit	no	35 days post anthesis	16.5366
SRR768130	whole fruit	no	60 days post anthesis	41.5227
SRR768131	whole fruit	no	87 days post anthesis	45.9509
SRR7343308	immature fruit flesh	no	immature	10.7648
SRR7343309	immature fruit flesh	no	immature	7.62438
SRR6320494	ripe fruit flesh	no	mature	118.443
SRR5405143	ripe fruit peel	no	mature	53.7307
SRR6320572	ripe fruit peel	no	mature	296.777
SRR7403504	fruit	uninfected	mature	132.561
SRR7403506	fruit	uninfected	mature	136.585
SRR7403507	fruit	uninfected	mature	144.539
SRR7403500	fruit	infected with penicillium expansum	mature	22.0875
SRR7403501	fruit	infected with penicillium expansum	mature	23.6447
SRR7403508	fruit	infected with penicillium expansum	mature	21.735
SRR7403502	fruit	infected with penicillium expansum	mature	27.3332
SRR7403503	fruit	infected with penicillium expansum	mature	28.6599
SRR7403505	fruit	infected with penicillium expansum	mature	29.9621
SRR1613973	Central seeds	no	20DAPF	23.7786
SRR1613974	Central seeds	no	20DAPF	20.3213
SRR1613975	Central seeds	no	20DAPF	28.7498
SRR1613976	Lateral seeds	no	20DAPF	26.7682
SRR1613977	Lateral seeds	no	20DAPF	25.216
SRR1613978	Lateral seeds	no	20DAPF	22.0199
SRR3744786	stem	no	mature	12.2184
SRR3744787	stem	no	mature	11.5804
SRR3744772	stem	no	mature	11.2292
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.59354
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.82543
SRR1089478	leaf	Virus-free	plantlets	10.9479
SRR1089477	leaf	ASGV-infected	plantlets	9.36769
SRR767660	leaf	uninfected	fully developed	5.15112
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	13.6778
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.45022
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.91516
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.82804
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.09269
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.08683
SRR6308182	young leaf	no	immature leaves	4.77423
SRR3744769	leaf	no	mature	4.26211
SRR3744770	leaf	no	mature	3.61556
SRR3744771	leaf	no	mature	3.79175
SRR5405145	leaf	no	mature	2.0104
SRR6320561	leaf	no	mature	2.95589