Gene detail

Detail information of MD09G1039900 Annotation

Gene ID	Annotation
MD09G1039900	ferredoxin thioredoxin reductase catalytic beta chain family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1039900	mRNA	Chr09	2509799	2512199	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G04700.1	1	ferredoxin thioredoxin reductase catalytic beta chain family protein
Prunus persica	Prupe.3G278500.1.p	1	ferredoxin thioredoxin reductase catalytic beta chain family protein
Pyrus x bretschneideri	Pbr026239.1	1	-
Rosa multiflora	Rmu_sc0012445.1_g000004.1	1	-
Rubus occidentalis	Ro06_G09716	1	-
Vitis vinifera	GSVIVT01032540001	1	ferredoxin thioredoxin reductase catalytic beta chain family protein
Solanum lycopersicum	Solyc02g087230.2.1	1	ferredoxin thioredoxin reductase catalytic beta chain family protein
Populus trichocarpa	Potri.001G350900.1	1	ferredoxin thioredoxin reductase catalytic beta chain family protein
Nicotiana benthamiana	Niben101Scf04797g00022.1	1	"Ferredoxin-thioredoxin reductase, catalytic chain"
Oryza sativa	LOC_Os09g07570.1	1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"
Zea mays	GRMZM2G122793_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0008937	ferredoxin-NAD(P) reductase activity	molecular_function
GO:0055114	oxidation-reduction process	biological_process

KEGG

KO	Description	Enzyme
K17892	ferredoxin-thioredoxin reductase catalytic chain	EC:1.8.7.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02943.11	FeThRed_B	41	140	1.80E-40

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	36.5732
SRR5252888	dormant buds	no	dormant buds(0 month)	7.05416
SRR5252889	dormant buds	no	dormant buds(0 month)	6.50723
SRR5252886	dormant buds	no	dormant buds(1 months)	5.97394
SRR5252887	dormant buds	no	dormant buds(1 months)	4.76184
SRR5252884	dormant buds	no	dormant buds(2 months)	5.06978
SRR5252882	dormant buds	no	dormant buds(3 months)	11.2994
SRR5252883	dormant buds	no	dormant buds(3 months)	9.69615
SRR5252880	dormant buds	no	dormant buds(4 months)	7.89379
SRR5252881	dormant buds	no	dormant buds(4 months)	10.6393
SRR5252878	bud break	no	bud break	6.17764
SRR5252879	bud break	no	bud break	4.04792
SRR3744766	flower	no	mature	8.72646
SRR3744767	flower	no	mature	8.0661
SRR3744768	flower	no	mature	9.45873
SRR6308190	stigmas	no	open flowers	11.3587
SRR6308181	styles	no	open flowers	7.85516
SRR6308188	filaments	no	open flowers	5.66112
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.37684
SRR6308192	pollen	no	open flowers	16.6582
SRR6308191	petals	no	open flowers	13.4742
SRR6308194	sepals	no	open flowers	19.1315
SRR6308193	receptacles	no	open flowers	10.0435
SRR6308189	ovaries	no	open flowers	11.3169
SRR3384922	fruit	no	1 week after full bloom	28.4379
SRR3384921	fruit	no	2 week after full bloom	17.8967
SRR3384920	fruit	no	3 week after full bloom	19.5403
SRR3384919	fruit	no	4 week after full bloom	28.3015
SRR3384923	fruit	no	5 week after full bloom	25.5854
SRR3384918	fruit	no	6 week after full bloom	26.7556
SRR3384917	fruit	no	8 week after full bloom	31.5078
SRR3384916	fruit	no	10 week after full bloom	28.675
SRR3384915	fruit	no	12 week after full bloom	22.1626
SRR3384914	fruit	no	14 week after full bloom	25.6077
SRR3384913	fruit	no	16 week after full bloom	26.7235
SRR3384912	fruit	no	18 week after full bloom	16.8657
SRR3384911	fruit	no	19 week after full bloom	33.8998
SRR3384910	fruit	no	20 week after full bloom	12.9959
SRR768128	whole fruit	no	25 days post anthesis	8.22443
SRR768129	whole fruit	no	35 days post anthesis	19.1054
SRR768130	whole fruit	no	60 days post anthesis	16.3072
SRR768131	whole fruit	no	87 days post anthesis	7.45242
SRR7343308	immature fruit flesh	no	immature	6.26736
SRR7343309	immature fruit flesh	no	immature	11.7482
SRR6320494	ripe fruit flesh	no	mature	0.737485
SRR5405143	ripe fruit peel	no	mature	13.2379
SRR6320572	ripe fruit peel	no	mature	13.8176
SRR7403504	fruit	uninfected	mature	24.268
SRR7403506	fruit	uninfected	mature	25.7129
SRR7403507	fruit	uninfected	mature	23.1035
SRR7403500	fruit	infected with penicillium expansum	mature	13.0356
SRR7403501	fruit	infected with penicillium expansum	mature	14.2981
SRR7403508	fruit	infected with penicillium expansum	mature	11.9243
SRR7403502	fruit	infected with penicillium expansum	mature	11.4068
SRR7403503	fruit	infected with penicillium expansum	mature	9.94803
SRR7403505	fruit	infected with penicillium expansum	mature	12.0797
SRR1613973	Central seeds	no	20DAPF	8.74442
SRR1613974	Central seeds	no	20DAPF	8.60914
SRR1613975	Central seeds	no	20DAPF	9.46712
SRR1613976	Lateral seeds	no	20DAPF	7.58354
SRR1613977	Lateral seeds	no	20DAPF	9.26638
SRR1613978	Lateral seeds	no	20DAPF	8.13062
SRR3744786	stem	no	mature	10.5517
SRR3744787	stem	no	mature	11.6409
SRR3744772	stem	no	mature	11.4853
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.80878
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.72072
SRR1089478	leaf	Virus-free	plantlets	19.61
SRR1089477	leaf	ASGV-infected	plantlets	21.4518
SRR767660	leaf	uninfected	fully developed	74.0882
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	82.6058
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	52.3147
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	52.6509
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	72.6032
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	30.893
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	46.8027
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	42.5481
SRR6308182	young leaf	no	immature leaves	10.3
SRR3744769	leaf	no	mature	22.6581
SRR3744770	leaf	no	mature	20.812
SRR3744771	leaf	no	mature	23.6222
SRR5405145	leaf	no	mature	25.2331
SRR6320561	leaf	no	mature	23.8292