Gene detail

Detail information of MD09G1047600 Annotation

Gene ID	Annotation
MD09G1047600	Integrase-type DNA-binding superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0014	pinene synthase activity sesquiterpene synthase activity sabinene synthase activity (R)-limonene synthase activity (4S)-limonene synthase activity (E)-beta-ocimene synthase activity myrcene synthase activity chloroplast stroma threonine-tRNA ligase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1047600	mRNA	Chr09	3119208	3121168	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	AP2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G271400.1.p	1	Integrase-type DNA-binding superfamily protein
Pyrus communis	PCP000182.1	1	-
Pyrus x bretschneideri	Pbr035227.1	1	-
Rosa multiflora	Rmu_co8472159.1_g000001.1	1	-
Rubus occidentalis	Ro06_G16333	1	-
Fragaria vesca	mrna01262.1	1	Integrase-type DNA-binding superfamily protein
Solanum lycopersicum	Solyc06g066390.1.1	1	Integrase-type DNA-binding superfamily protein
Populus trichocarpa	Potri.017G078600.1	1	Integrase-type DNA-binding superfamily protein
Nicotiana benthamiana	Niben101Scf15227g00026.1	1	Ethylene-responsive transcription factor 10
Oryza sativa	LOC_Os05g45954.1	1	"AP2 domain containing protein, expressed"
Zea mays	GRMZM2G113078_P01	1	Putative AP2/EREBP transcription factor superfamily protein

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.16	AP2	67	126	3.90E-12
PF00847.16	AP2	169	220	7.70E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0733985
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.171315
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.159575
SRR5252881	dormant buds	no	dormant buds(4 months)	0.177121
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.675015
SRR3744767	flower	no	mature	0.591826
SRR3744768	flower	no	mature	0.478139
SRR6308190	stigmas	no	open flowers	0.252016
SRR6308181	styles	no	open flowers	0.108228
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.0748513
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.0887269
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0890797
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0305982
SRR1613975	Central seeds	no	20DAPF	0.0415419
SRR1613976	Lateral seeds	no	20DAPF	0.0327725
SRR1613977	Lateral seeds	no	20DAPF	0.0507044
SRR1613978	Lateral seeds	no	20DAPF	0.0582182
SRR3744786	stem	no	mature	0.347282
SRR3744787	stem	no	mature	0.206249
SRR3744772	stem	no	mature	0.342841
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.132043
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0430842
SRR1089478	leaf	Virus-free	plantlets	0.573715
SRR1089477	leaf	ASGV-infected	plantlets	0.667537
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.104763
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.566347
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.219223
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.0708744
SRR3744770	leaf	no	mature	0.112276
SRR3744771	leaf	no	mature	0.14762
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0