Gene detail

Detail information of MD09G1050300 Annotation

Gene ID	Annotation
MD09G1050300	Ankyrin repeat family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1050300	mRNA	Chr09	3340082	3347043	+

Sequences

CDS:

MD09G1050300

CCTCAGACTCAAGAGTGAAAAGACCAGACTGACCAGACACTGAAACATTTCCACGGCGTCCAAACGCCTCTCACTGTAAACCTAAATCTAGGGTTTCGCCATCGCTACCACCTCAAAGCTTGCATACGAACCGCCGTGTAGTTACTCCGATAAATGCCTGCTGCATTGCTCCGGCGGTCCAGAGGTTTATGATCCGCGCTCAAAAATTAGGGTTTTCTGATGAATCTGGAAATACAAAATTTTGGAGCGACGGAGCTCCTGACCAACTCGCTTCCAAAATGCACCTATTTCTCTTACAATCACGACGAAAACGTCGCGTCCAAGGCCGGCGACGATCTCCGGAGTGCAAAGAGCGAACGGTTCGACTTCGTGGAAGCCGAATCGCTCCTGATCAACTCGGTTTTCCGAGACAACAAGGCACAACTCGTGACTCACGCGAAGCGGTTCGCGGAGGCGTCTGGGGAGGCGATTGACCGGAGCACGGTGTCGAAGCTCCTCCACCTCTGCTGCAACTTCGACTCACCGGAGTGCGCGTCGGCATTGCTAGCCGGAGAGGTCGGAGAGACACCGCTGATAAACGAGCTCGACGATTCCGGGAAATCGGCGCTGCACACGGCGGCTCTGGCTCACGCGGCGAGGTGCGTGGAGGTTTTGCTAAAGAAACACGCTCGTACGGGCCTGAGGACACGAGACGGACGCGCACAGCTTGCTCTGGACCTGTCTCTCTCTAACAGCAGGATCGATGTGATTTGGACTCCGGATGATTACACCATTGAGGACTTGGTTGTTGTTCTTGGTGAAAAGGATTTGACGACTGTGAGACTTCTCAGTGAGAAGACGAAGGAACTAGGTGACGTGGCATATGCAAACGCCGTTGAAGGCCGTATAGTTGCTTTAGCGGCTCTGCTTACAGTAGCTGCGGAGAAGGTGAACGAAGCGGTGTTGGAGTTGCGCGATGCCGATTCGGGTTCCAAAGAGAAGGTGACAATATACGAGTGCGTTATACGGGAAGCTCTGTCCCTGGTCCCTTCAAATACGCCGTTGAGGGCGGCCAAACGCACCTCGAGCGCCACGGAGAGCGACGATGCCGAGAAAAGGAGGATTCTGCTTCACGAGATAGAGCTGCTTCAGCTCTTCGGAGCTGTTGCTCTCAGCAGTGGTACGGATAAGAAGGTGATGTCACCACTCATCCGAGCAGCCCAGGTAGGAGATGAAGCAGTCATTCGTCTGCTTCTGAAGACAAATATAGATGTAAATGATGCTGATGATGCAGAAGGAAATTCTGCTCTTCATTGGACCCTCAAACTGTCGAGATTGTTGCATCCACAGCAGATCAAAATTTTATGGCTTCTCATTAAGCATGGGGCACGAGTGAGCCAGAGGAACAAATTAGGATTAACTTCCTTTCATATTGCTGCTGGTAGTGGTAACACAGAGGCACTTCAGGTCCTTCTGTTGGAAGACCCAGAAGGTGTCCAGTATAAGACAGAAATTAAAGAAACCCCACTGTTCTTTGCTGTGAGAAATGACAACATGGAGTGCGCTGAACTTCTTTTGAGCTGGGGAGCAAATAGTGAAATTCTCAATCTGCGACAAAGACCTATTGACCTGACAAACTCGCAAGATATGCGTTTCATGTTGCTGAACCCGACCAGTGTTAGCCTCAACACCAATCAACATAAATGCCATGCTTGTTCACGAGTCAATGAGGCTTTCTCAAGCACCTGCGAAGCACTTCTAACCATGCAATATGAAGACACCGCCACTGAAAGTAAAGCCGAGATTTGCAAATACTTTGACTCCTCTCGCGGATGTGTCAGAGGATCTAAGTGCTTTTTTTCACATGATGTGGAGGAGCATCGGAAAGTGAAGCATGAAGCAGCCCATAATCATTCTCCTGTTGATAAAGCATTAGCCCTCAAGCGCATCTTCGTAGGAGGACTTCCTCCTTCAGTGGACTCTGATTCGTTGGGTAAGTTTTTTGAAAAAGAATTTGGGCCGGTGGAAGATGCCATAGTCATTTTAGCTCAAATGGAAAACAAGACACACTCTCGAGGCTTTGGATTTGTCACATTTAAAGAGGAGAAATCTGTTTCTGCAGCTGTTCATGCACACTATATCACCATGGCAGGCAAGCCGGTTGAAATAAAAAGCCTAATACCAAAATTGGCAGCTGAGTCGGTGAAAATGGCACTTCGACATCAAGAACAAAAGAATTGCAATTGCCAATCTCCACTTCCAGCAAAGGTGTTGTCCAACGAGATGATTATGGAAGCAAATAAACCCAAACAAGGTTCTTGGCTTGATAAGGTAGTCTACGGCCAACCAAACACATCCCCTCAAGCACATAATACCAGCAGCCCCAAGGATAAAAGCGTGCCTGTATGGCTAAAGGCTTTCAAGAAGTGGTTTCCTCGCTTCTTACAACGTCTGCCAAAGCCCACGGTTGGAGAATATGCTCTCTCCTCTCTGAAAAGTGATTTCAGGGCTTCTGTTGGCTTAGAACTGGATCATTCGCACATTGGCTTCTCTAAGCTCAGTGACTTCATCAAATCTTTCTCCAACTTATGTACCATTAAGCATGTCCCTATTGGAAAACTCGGATCTCTCAGTCACATGGTCCTCCTACCAAATCCCAGGCGTCACCACAACCTTTGTCATGCATTCAAAATGCCTTGCAGTTCCCCTTTTTCTACACCAACTGATGATGGTGGGGATTCAAAATGTCTTCATGACATTTCAGTTGAGGCTGGCGGTGATTCAAAGTGTCTTCAAGACCTCCCAATGGATGATGTTGGTGATTCAAAGTGTCTTCAAGACCTCCCAACGGATGATGTTGGAGATTCAAAGTGCCTTCAGGATATTCCAACCGATGATGTTGGTGATCCAAAGTGTGTTCGGGACATTCCAACTAATGATGGCGGTGATTCAAAGCATCTTCTGGAGCTTTCGGTTGATGATCGTGCCGGAAACTCTGGGTACCCTAAAGAGAGACCCTCCTCTGGGAACCCTGAAGTAACCTCAGGAAAGGATACAACATCCCATTGGGAGCATTCAAGGGTCCTGCAATTCTTGAAGCCAGATCCTGTATTCCATGGTCGAAAAGATTATGATGTGCAAGAAGTAAGAGGACAGCTTGTAGAGAATACAGGAAGCACTAAGCCTAGCGATCCACAGCGGCATTTGGTTTTGGAGGCCCTTACCAGAAATAGGAACAAATCCTCGGGGTTCTTCCTTCGTGAATTTGATTTCTACAAGAACTACAAGGAAAGCATCTTGGAGGGAAAGTGTTTTGCCTGCAACCAGAACCAGATGTCATGGGCCAACTTCCCCTGCCAACACTTGCTGTGGTGCGGCGACTGCAAAGTGCAGGCCATACTGGCATCTAGTGGTTCTGTGCATAAATGCGTGGTTTGTGATGCGCAAGTACACAAACTCATTTCACTTCCGCGGAATGATGAGTTCTTGCCTATGCCACCTGGTCTTTTCCGAACTCCATTCGTGCAGAAGACATCTCCACTGATGACCGGTAACAGATGAAATCATTTGCACTCGAGGTCCCCGTGCATAGAGGGGAGAAATGCTGCAAGTGGAAGGCAGATGACAGCTGAAGACGCATAGTATGAGGGTGCAGGTAAACTGTAAATATGCACCTGGAAAAGGTAAAGAGGTTAAAGGCGGGTTGGGCATAGCGGTTCCTTCCCGCCACACTAGAAAATACTTTTGGACTCAGGTCAAAACCGTAGAGTTTGCCGTAGAGTTTGCCGTAGAGCAGTAGCCTTATATCACTTAGAAGAAGGAAAGAAAATGATAGCAGAAGCATTCTACTGATATATATATATATAACTCGTTTTGTTGATATTTTGGAGGATAGAATCTGAATACAGAAGGGAACTATCAAAGTCCTCACAATCCTTATTTTGTCTTGCAATGTAGCTACTTCTACGAAGTGTGACATATACAACAGTAATTACCCTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G28880.1	1	Ankyrin repeat family protein
Prunus persica	Prupe.3G268600.3.p	1	Ankyrin repeat family protein
Prunus persica	Prupe.3G268600.2.p	0.992	Ankyrin repeat family protein
Prunus persica	Prupe.3G268600.1.p	0.986	Ankyrin repeat family protein
Pyrus communis	PCP000160.1	1	-
Pyrus x bretschneideri	Pbr019257.1	1	-
Rosa multiflora	Rmu_sc0002416.1_g000001.1	1	-
Rubus occidentalis	Ro01_G18762	1	-
Fragaria vesca	mrna03839.1	1	Ankyrin repeat family protein
Vitis vinifera	GSVIVT01011394001	1	Ankyrin repeat family protein
Populus trichocarpa	Potri.004G129100.1	1	Ankyrin repeat family protein
Oryza sativa	LOC_Os12g38460.1	1	RNA recognition motif family protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0000166	nucleotide binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function
GO:0046872	metal ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.18	RRM_1	570	631	1.40E-11
PF12872.3	OST-HTH	724	792	1.00E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.019422
SRR5252888	dormant buds	no	dormant buds(0 month)	0.0588049
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0681222
SRR5252886	dormant buds	no	dormant buds(1 months)	0.249
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0529275
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0845253
SRR5252882	dormant buds	no	dormant buds(3 months)	0.127161
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0469542
SRR5252878	bud break	no	bud break	0.0842694
SRR5252879	bud break	no	bud break	0.560674
SRR3744766	flower	no	mature	0.0875513
SRR3744767	flower	no	mature	0.160459
SRR3744768	flower	no	mature	0.160227
SRR6308190	stigmas	no	open flowers	0.4764
SRR6308181	styles	no	open flowers	0.26387
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.136255
SRR6308192	pollen	no	open flowers	0.771874
SRR6308191	petals	no	open flowers	0.26317
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.37774
SRR6308189	ovaries	no	open flowers	0.118154
SRR3384922	fruit	no	1 week after full bloom	0.27774
SRR3384921	fruit	no	2 week after full bloom	0.10737
SRR3384920	fruit	no	3 week after full bloom	0.0567247
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0.0332247
SRR3384918	fruit	no	6 week after full bloom	0.0184929
SRR3384917	fruit	no	8 week after full bloom	0.0266991
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.167601
SRR768129	whole fruit	no	35 days post anthesis	0.236637
SRR768130	whole fruit	no	60 days post anthesis	0.0440827
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0110367
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.43937
SRR1613974	Central seeds	no	20DAPF	1.59774
SRR1613975	Central seeds	no	20DAPF	1.51454
SRR1613976	Lateral seeds	no	20DAPF	1.1992
SRR1613977	Lateral seeds	no	20DAPF	1.42199
SRR1613978	Lateral seeds	no	20DAPF	1.6068
SRR3744786	stem	no	mature	0.0360261
SRR3744787	stem	no	mature	0.00890415
SRR3744772	stem	no	mature	0.088811
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.294203
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.158423
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.113141
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.413889
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.17089
SRR3744769	leaf	no	mature	0.0184508
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0.0680185
SRR6320561	leaf	no	mature	0