Gene detail

Detail information of MD09G1063000 Annotation

Gene ID	Annotation
MD09G1063000	U5 small nuclear ribonucleoprotein helicase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0539	regulation of chromosome organization nuclear-transcribed mRNA catabolic process tissue development positive regulation of organelle organization organ morphogenesis cytosol DNA metabolic process mismatch repair

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1063000	mRNA	Chr09	4265964	4272213	-

Sequences

CDS:

MD09G1063000

CAAGGTCAATGCCTGGGGTAGAATATTTTCTGAGAATGTTATACTTGGCCGCCACGCTTGAGGAATGGCGCGAATCCTACAAGAAGGAGATGACCACGCAACTCAATTTATCCCCAAAAAAACGGGAGAAGGTCTCACAATTCATGGCGCAGAACAGCGCCGGCGGTGCGGAGGCGCGTGCCCGATCACGTGACGAGCTGAGCGGCGAGGGTGAGTCCCTTTGGGGTAAGATTAATCCCAAGAACTTCGGCGACAGGGTTTTCTGGGGAAGGCCGTCGGAGCTTGACGACAAGGTTAAAAAGTCCAGGAAGAAGAAAGAGCGGGACCCAATTGATGCCGAGCCTGCATCCGTGTTTCGCCGGAGCAAAAGGCGTCGCCTTTGTGAAGATAGCGTCCTCAGTGTTTCGGTGGAGGAAGAAGGTGTTTACAGGCCGACGAACAGCGAAACCGGGAAGGCGTACGAGGAAATTATTGAAGTGATTCAGAAACAGTTGGGTGGGCAGCCACTGAGTGTAGTGGGCGCCGCGGATGAGATTTTGGATGTTCTTAAAAACGAGAGCTTTGAGGATTCTGAGAAGAAAAAGGAGATTCAGAAGTTGTGGAACCCGATAGCGGATGAAGTTTTTGATCGGTTGGATTCGATTGGGGGGCGGATCACGGATTACGGAGCTGGGATTGATGCCTTGGATGATGGCGGTGAAGCTGTTGATGACGATGTGGGTGTTGCGGTTCGATTTGAACAGGATGAGGAGGAGGAGGAGAGTAGCGATCTCGATATGGTCATGGAAGATGAGGAACAGGATGGGAATAATGTGGTCATTCCGAGCAAGTCAGGGGCAATGCAAATTGGTGGTGAGATTGATGATGATGATGTGCAGGAAGCGGATAATGATGGTTCGAGCCTTAATGTTCAGGACATTGGTGCTTATTGGCTTCAGAGGAGGATCTTTGAGGCTTATGAGAAAAATATTGATCCAGTTCAATGCCGGAAGCTTTCTGAAGAAGTTCTCCAGATACTTGCCGAAGACAATGACAGGGGAGTTGAAACCAGGCTGTTGATGCACCTTCAGTTTGACAAATTCAACCTTGTTAAGCTTCTAGTGCGAAACCGGTTGAAAATTGTCTGGTGCACCCGTTTAGGGAGAGCCCAAAGCGAAGATGAGAGGAAGAAAATCGAGGAGGATATGTTGCATTCTGGTCCAGATTTGGCTGCAATTTTACAACAGTTGCACAACACGACGGCCAGCGCGAAAGAGAGGCAAAAGAACTTGGAGAAGAGTATTAGAGAAGAGGCTCGGAGGTTGAAGGATGAGACTGCTGGGAACGAGCTTGGGGATAGAGATGGAGGAAGTTATTGGTTCAGAGGCGAGGTGCGGTTGCTTGATCTTGATAGCCTTGCTCAAGAAGAAAGTAGATTCTTGGTGTCTAACAAGTGCGTGTTTCCACTCAGGTCTCGCAAAGAAATGAAAAAGGGATATGAGGAAATTCATGTTCCAGCATTGAAGCCTCAACCATATCCTGATCATGAGCTTGTAAAAGTATCTGCCATGCCTGATTGGGCACAACCGGCTTTCAAAGGGATGAGCCGGTTGAACAGAATACAAAGCAGAGTCTATGGGGCTGCTCTTTTCGAAGCTGACAATATCCTCTTATGTGCTCCCACTGGTGCAGCGCTGGTGGCTGAAGTTGTTAGAAATCTGTCTAATCGTTTGCAGGACTATGGTGTCACGGTGAAGGAGCTTAGTGGTGACCAGACACTCACTCGCCAACAAATTGAAGAGACTCAAATTATTGTCACAACTCCAGAGAAGTGGGATATCATTACCCGAAAGTCAGGTGATCGTACTTACACACAACTTCTAAAACTTTTAATTATTGATGAAATTCATCTACTTCATGACAATAGAGGTCCTGTTCTTGAAAGTATTGTTGCTAGAACTGTTAGGCTGATTGAGACCACAAAAGACCATATCCGGTTGGTGGGATTATCTGCTACACTCCCTAACTATGAAGATGTGGCGAAGTTCTTGCGCGTTACAAAGGGGCTGTTTCATTTTGACAATAGTTTCAGACCTGTACCCCTTTCGCAACAATATATTGGAATCACAATAAGGAAGCCACTGCAGAGGTTGCAGTTGATGAATGATATTTGTTATGAAAAGGTGATTTCTATGGCTGGAAAGCATCAAGTTCTTATCTTTGTGCATTCAAGGAGAGAAACGGCTAAAACAGCTTGTGCTATACGAGACACTGCACTTGATAAGGGCACTCTTGGTAGGTTTCTGAAAGAAGACAGTGCCAGCCATGAGATTCTTAATGTTCATAAAGATTTGGTAAAGAGCAATGATCTCAAAGGTCTTCTGCCATATGGTTTTGCTATTCATCATGCTGGGTTGAACAGGGATGATCGCCAACAGGTTGAGGCTCTTTTTGCTGATGGGTATGTACAAGTTTTAGTTTCCACTGCAACACTTGCTTGGGGTGTGAATCTGCCAGCTCACACCGTGATAATTAAGGGGACTCAGATCTATAATCCAGAAAAGGGAGCATGGACTGAACTAAGTCCTCTTGATATTATGCAGATGTTGGGTCGGGCAGGACGACCTCAGTACGATTCAGAAGGAGAAGGGATAATCATCACTGGCCACAATGAATCACAATACTATCTTTCTTTGATGAATCAACAACTACCTATTGAAAGTCAATTAGTCTCCAAATTGGCTGACCAATTGAATGCTGAAATTGTTCTTGGAACTGTTCAAAATGCTAGAGAAGCCTCTGATTGGTTAACACACACTTACCTGTATGTTCGCATGTTAAAAGAACCAACCCTGTATGGTTTGGAAGCTGATATTCGCACAAGAGATAGTCAGTTGGAGGAGAGGCGTGCGGATCTGATCCATTCTGCTGCAACCATTTTGGACAGGAACAATTTGATCAGGTATGATAGAAAAAGTGGATACTTCCAGGTCACAGACCTGGGGCAAATCGCGAGTTATTATTATATAACTCATGGAACAATATCCACATATAATGAGCTATTAAAGTCCACAATGGGTGATATAGATCTGTTTCGGTTGTTTTCACTAAGTGAGGATTTTATATACGTCACTGTGCGGCAGGATGAAAAGATGGAACTCGCACAACTATTGGATCGTGTTCCTGTCCCGGTCAATGGCAGTCGGGAAGAGCCCAGTGCCAAGATTAATGTTTTGCTGCAAGCTTATATTTCACAACTGAAACTTGAAGGGCTTTCTTTGTCATCTGATATGGTTTTCATTACTCAGAGTGGGGGGCGTCTTCTACGGGCTATTTTTGAGATTGTCTTGAGACGAGGATGGGCTCAGCTAGCAGGAAAGGCATTGAAATTGTGCAAAATGGTTGACAAGAGGATGTGGGGCGTCCAAACACCCCTTCGCCAGTTCAATGGGTATTATGACCTCTCTCCACAGGAGCTGGGGGAGCTTATTCGTATGCCAAAGATGGGAAGAATGCTTCATAAGTTCATCCACCAGTTCCCCAAATTAAACCTTGCAGCCCATGTCCAACCGATTACTCGCACAGTACTAAACGTCGAGCTTGTTATAACACCAGACTTTCAGTGGGAGGACAGAATTCATGGATATGTGGAGCCCTTTTGGGTAATTGTGGAGGATAATGACGGTGAGTGCATTCTTCATCATGAATATTTTCTACGGAAGAAGCTGTATATTGATGAGGATCATACTTTGAACTTCACAGTTCCAATTTGTGAACCACTTCCTCCCCAATACTACATTCGTGTTGTGTCGGATAGGTGGCTTGGGTCGGAGACTGTTTTGCCTGTTTCTTTCAGGCGCCTCATCTTACCTGATAAGTATCCTCCACCTACAGAGTTATTGGACTTGCAACCATTTCCCTTGGCTGCACTAAGGAATCCAGTGTTCGAAGCTCTGTACGATCATGATTTTAAGCATTTTAATCTTATTCAGACTCAGGTCTTCACTGTTCTGTATAATTCAGATGAGAACGTTTTAGTTGCTGCACCAACAGGGAGTGGGAAGACCATATGTGCAGAGTTTGCCATATTGAGGAATCATCAAAAGGGCACTGAAGCTGATAGTCCTGTCATGCGTGTTGTGTATATTGCACCTTTTGAAGCTCTTGCTAATGAGCGTTACAGTGACTGGGAAAGGAAGTTTGGAAAGGGTCTCAATCTGTGCGTTGAAAAATTATCTGGGGAAATAAATACAGACCTGAAACGGCTTGAGAAAAGTCATATTATCATCAGCACTCCAGAGAAATGGGATGCTTTATCTCGCCGCAGGAAAGAGTGGAAACATGTTCAACAGGTTAGTCTTTTTATTGTAGACGAACTCCACTTGATTAGTGGTCAATGTGGTCCAATCTTGGAGGCAATAGTCTCTAGGATGAGATATATATCAACTCAATCCGAGAACATGATTCGTATTGTGGCTCTCTCAACTTCTCTTGGAAATGCAAAGGATCTTGGAGAATGGATAGGGGCTACCTCTCACAGCATTTTCAATTTTCCTCCTGCGGCGCGTCCAGTGCCTCTTGAAATACACATTCAGGGGGTGGATTTTGCTGATTTTGAAGCGAGGATGCAAGCAATGATGAAATTAACATACACTGCCATTGTCCAACATGCCAGGAATGGTGAACCAGCTCTTGTGTATGTTCCTACAAGGAAACACGTCCGACTAACTGCTGAGCATCTGGTGACTTGCTCAAATGTAAATAATGAGACACCACCTTTTTTATTGCGATCTTGGGAAGGTCATATCGAGTCTTTGATTGGAAGCCTTAATGATGAAAGATTGCAATCCACTTTGCGCATTGGAGTGGGCTACTTGCATGAGGGCTTAACTAGTTCAGATCAACAAATTGTGTCACAGCTTTATGAATCTGGTTGGATTCAAGTGCGTGTAGTAAGCAGTTCAATGTGTTGGGGAGTGCCGCTGTCAGCTCATTTGGTGGTTGTGATGGGAACCCAATATTATGACTGCCGGGAAAATGTTCACACCGATTACCATGTTACTGATCTGTTGCAGATGATGGGCGGTGCCAATCGCCCTCTGCTAGATGATTCTGGGAAGTGTTTCATCCTCTGCCACACGCCTCGTAAAGAATACTACAAGAAGTTCTTGTATGAAGCATTGCCTGTTGAAAGCCATTTCCACCATTACCTACATGATAATGTAAATGCGAAAATTGTTGCTGGAATGATTGAGAACAAGCAAGACGCAGTTGATTATCTTACATGGACCTTCTTGTACAGGAGGATCACACAGAATCCCAACTATTATAATCTCCAAGTAGTTAGTCAGCGGCATCTTTCTGAACACTTCTCGGAGCTTGTTGAAACGACACTGAGTGATTTGGAAGCAAGCGAGTGCGTTGCTATCAAGAATGAAAAAAACCTATCTCCTTTGCCTCTTGGCATGATAGCATCGTATTATTACATCAGTTATACAACTGTAGAGCGGTTCAGTTCTTCTTTAACTTCCAAAACAAAGATGAAGGGTCTTCTGGAGATTCTAGCTCAAGCTTCAGAGTATTCACAGCTTCCCATACGATCTGGGGATGAAGAGTTGGTCCGAAGGTTAATTAACCACCAAAGGTTCTCTTTCGAGAATCCCAAATGCACAGACCCTCATGTGAAAGCAAATACGCTGCTTCAGGCTCACTTCTCCAGGCAACCTGTAGGAGGGAACCTAACAATGGATCAGCAAGAGGTGATCCTTTCCGCAACTAGGTTGGTTTATGCAATGATTGATGTAATTTCCAGTAACGGCTGGCTAAGACTTGCTGTCCAAGCGATGGAGTTGAGCCAGATGGTGACTCAGGGTATGTGGGACCGCGATTCTGAGCTTCTACAGCTTCCTCATTTCACATAGGAGCTGGCAAAGAGATGTCAAGATAATCCTGAAAAGAG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP031012.1	1	-

Gene Ontology

GO term	Description	Category
GO:0008026	ATP-dependent helicase activity	molecular_function
GO:0003676	nucleic acid binding	molecular_function
GO:0005524	ATP binding	molecular_function

KEGG

KO	Description	Enzyme
K12854	pre-mRNA-splicing helicase BRR2	EC:3.6.4.13

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.25	DEAD	544	668	3.40E-13
PF00270.25	DEAD	1320	1489	7.10E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.42774
SRR5252888	dormant buds	no	dormant buds(0 month)	1.46939
SRR5252889	dormant buds	no	dormant buds(0 month)	1.64248
SRR5252886	dormant buds	no	dormant buds(1 months)	1.24438
SRR5252887	dormant buds	no	dormant buds(1 months)	1.13111
SRR5252884	dormant buds	no	dormant buds(2 months)	2.00092
SRR5252882	dormant buds	no	dormant buds(3 months)	1.50511
SRR5252883	dormant buds	no	dormant buds(3 months)	1.00227
SRR5252880	dormant buds	no	dormant buds(4 months)	1.78028
SRR5252881	dormant buds	no	dormant buds(4 months)	1.9606
SRR5252878	bud break	no	bud break	1.2745
SRR5252879	bud break	no	bud break	1.10604
SRR3744766	flower	no	mature	1.24024
SRR3744767	flower	no	mature	1.31219
SRR3744768	flower	no	mature	1.6032
SRR6308190	stigmas	no	open flowers	0.448558
SRR6308181	styles	no	open flowers	0.347965
SRR6308188	filaments	no	open flowers	0.289201
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.598913
SRR6308192	pollen	no	open flowers	2.71179
SRR6308191	petals	no	open flowers	0.446105
SRR6308194	sepals	no	open flowers	0.624342
SRR6308193	receptacles	no	open flowers	0.498018
SRR6308189	ovaries	no	open flowers	0.607619
SRR3384922	fruit	no	1 week after full bloom	0.091314
SRR3384921	fruit	no	2 week after full bloom	0.0282405
SRR3384920	fruit	no	3 week after full bloom	0.136764
SRR3384919	fruit	no	4 week after full bloom	0.0689182
SRR3384923	fruit	no	5 week after full bloom	0.0546172
SRR3384918	fruit	no	6 week after full bloom	0.0851203
SRR3384917	fruit	no	8 week after full bloom	0.105336
SRR3384916	fruit	no	10 week after full bloom	0.0798233
SRR3384915	fruit	no	12 week after full bloom	0.0809538
SRR3384914	fruit	no	14 week after full bloom	0.065428
SRR3384913	fruit	no	16 week after full bloom	0.0616506
SRR3384912	fruit	no	18 week after full bloom	0.0578559
SRR3384911	fruit	no	19 week after full bloom	0.152599
SRR3384910	fruit	no	20 week after full bloom	0.282409
SRR768128	whole fruit	no	25 days post anthesis	0.598599
SRR768129	whole fruit	no	35 days post anthesis	0.0864935
SRR768130	whole fruit	no	60 days post anthesis	0.261026
SRR768131	whole fruit	no	87 days post anthesis	0.807737
SRR7343308	immature fruit flesh	no	immature	1.07755
SRR7343309	immature fruit flesh	no	immature	0.613871
SRR6320494	ripe fruit flesh	no	mature	0.519568
SRR5405143	ripe fruit peel	no	mature	0.769952
SRR6320572	ripe fruit peel	no	mature	1.10443
SRR7403504	fruit	uninfected	mature	0.355746
SRR7403506	fruit	uninfected	mature	0.444817
SRR7403507	fruit	uninfected	mature	0.446191
SRR7403500	fruit	infected with penicillium expansum	mature	0.919443
SRR7403501	fruit	infected with penicillium expansum	mature	0.863213
SRR7403508	fruit	infected with penicillium expansum	mature	0.702578
SRR7403502	fruit	infected with penicillium expansum	mature	0.900152
SRR7403503	fruit	infected with penicillium expansum	mature	1.19608
SRR7403505	fruit	infected with penicillium expansum	mature	1.13745
SRR1613973	Central seeds	no	20DAPF	0.430621
SRR1613974	Central seeds	no	20DAPF	0.524455
SRR1613975	Central seeds	no	20DAPF	0.405309
SRR1613976	Lateral seeds	no	20DAPF	0.466661
SRR1613977	Lateral seeds	no	20DAPF	0.343174
SRR1613978	Lateral seeds	no	20DAPF	0.436671
SRR3744786	stem	no	mature	1.94326
SRR3744787	stem	no	mature	2.01431
SRR3744772	stem	no	mature	2.21293
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.650131
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.758562
SRR1089478	leaf	Virus-free	plantlets	0.201734
SRR1089477	leaf	ASGV-infected	plantlets	0.449889
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.372841
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.33061
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.234095
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.623421
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.130526
SRR6308182	young leaf	no	immature leaves	0.547212
SRR3744769	leaf	no	mature	1.73718
SRR3744770	leaf	no	mature	1.80519
SRR3744771	leaf	no	mature	1.73651
SRR5405145	leaf	no	mature	1.11858
SRR6320561	leaf	no	mature	0.763604