Gene detail

Detail information of MD09G1064000 Annotation

Gene ID	Annotation
MD09G1064000	Ribosomal protein S19e family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1064000	mRNA	Chr09	4391534	4393377	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G61170.1	1	Ribosomal protein S19e family protein
Arabidopsis thaliana	AT3G02080.1	1	Ribosomal protein S19e family protein
Arabidopsis thaliana	AT5G15520.1	0.677	Ribosomal protein S19e family protein
Pyrus x bretschneideri	Pbr006418.1	1	-
Rosa multiflora	Rmu_sc0006218.1_g000031.1	1	-
Rubus occidentalis	Ro05_G03317	1	-
Rubus occidentalis	Ro06_G18311	1	-
Fragaria vesca	mrna04306.1	1	Ribosomal protein S19e family protein
Solanum lycopersicum	Solyc03g115360.2.1	1	Ribosomal protein S19e family protein
Populus trichocarpa	Potri.004G118800.1	1	Ribosomal protein S19e family protein
Nicotiana benthamiana	Niben101Scf01346g01023.1	1	40S ribosomal protein S19-3
Nicotiana benthamiana	Niben101Scf02646g02007.1	0.9	40S ribosomal protein S19-3
Oryza sativa	LOC_Os03g31090.1	1	"40S ribosomal protein S19, putative"

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02966	small subunit ribosomal protein S19e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	134.088
SRR5252888	dormant buds	no	dormant buds(0 month)	80.0864
SRR5252889	dormant buds	no	dormant buds(0 month)	57.9323
SRR5252886	dormant buds	no	dormant buds(1 months)	89.6116
SRR5252887	dormant buds	no	dormant buds(1 months)	72.082
SRR5252884	dormant buds	no	dormant buds(2 months)	106
SRR5252882	dormant buds	no	dormant buds(3 months)	102.132
SRR5252883	dormant buds	no	dormant buds(3 months)	70.5885
SRR5252880	dormant buds	no	dormant buds(4 months)	139.989
SRR5252881	dormant buds	no	dormant buds(4 months)	106.337
SRR5252878	bud break	no	bud break	99.1874
SRR5252879	bud break	no	bud break	227.318
SRR3744766	flower	no	mature	36.1364
SRR3744767	flower	no	mature	36.713
SRR3744768	flower	no	mature	38.0161
SRR6308190	stigmas	no	open flowers	32.0179
SRR6308181	styles	no	open flowers	32.6368
SRR6308188	filaments	no	open flowers	79.2717
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	18.0254
SRR6308192	pollen	no	open flowers	7.72128
SRR6308191	petals	no	open flowers	79.262
SRR6308194	sepals	no	open flowers	51.5239
SRR6308193	receptacles	no	open flowers	65.0657
SRR6308189	ovaries	no	open flowers	51.1173
SRR3384922	fruit	no	1 week after full bloom	144.439
SRR3384921	fruit	no	2 week after full bloom	117.425
SRR3384920	fruit	no	3 week after full bloom	113.653
SRR3384919	fruit	no	4 week after full bloom	104.783
SRR3384923	fruit	no	5 week after full bloom	78.2437
SRR3384918	fruit	no	6 week after full bloom	96.5639
SRR3384917	fruit	no	8 week after full bloom	97.9351
SRR3384916	fruit	no	10 week after full bloom	89.9133
SRR3384915	fruit	no	12 week after full bloom	103.096
SRR3384914	fruit	no	14 week after full bloom	87.1061
SRR3384913	fruit	no	16 week after full bloom	84.8226
SRR3384912	fruit	no	18 week after full bloom	92.0776
SRR3384911	fruit	no	19 week after full bloom	82.8505
SRR3384910	fruit	no	20 week after full bloom	68.3321
SRR768128	whole fruit	no	25 days post anthesis	78.5975
SRR768129	whole fruit	no	35 days post anthesis	129.387
SRR768130	whole fruit	no	60 days post anthesis	73.0285
SRR768131	whole fruit	no	87 days post anthesis	37.5251
SRR7343308	immature fruit flesh	no	immature	55.7599
SRR7343309	immature fruit flesh	no	immature	55.0083
SRR6320494	ripe fruit flesh	no	mature	54.6448
SRR5405143	ripe fruit peel	no	mature	41.1495
SRR6320572	ripe fruit peel	no	mature	56.5523
SRR7403504	fruit	uninfected	mature	52.4796
SRR7403506	fruit	uninfected	mature	48.5788
SRR7403507	fruit	uninfected	mature	52.3353
SRR7403500	fruit	infected with penicillium expansum	mature	70.2651
SRR7403501	fruit	infected with penicillium expansum	mature	69.5145
SRR7403508	fruit	infected with penicillium expansum	mature	70.868
SRR7403502	fruit	infected with penicillium expansum	mature	66.7904
SRR7403503	fruit	infected with penicillium expansum	mature	58.1295
SRR7403505	fruit	infected with penicillium expansum	mature	57.912
SRR1613973	Central seeds	no	20DAPF	130.342
SRR1613974	Central seeds	no	20DAPF	116.567
SRR1613975	Central seeds	no	20DAPF	124.711
SRR1613976	Lateral seeds	no	20DAPF	99.9012
SRR1613977	Lateral seeds	no	20DAPF	120.531
SRR1613978	Lateral seeds	no	20DAPF	111.918
SRR3744786	stem	no	mature	35.7448
SRR3744787	stem	no	mature	36.7378
SRR3744772	stem	no	mature	40.926
SRX765691	seedling shoot apex	no	4-6 week old seedling	78.8162
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	80.6003
SRR1089478	leaf	Virus-free	plantlets	36.5482
SRR1089477	leaf	ASGV-infected	plantlets	31.0587
SRR767660	leaf	uninfected	fully developed	62.9564
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	81.7939
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	71.2798
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	143.228
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	49.7599
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	38.693
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	46.939
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	52.0353
SRR6308182	young leaf	no	immature leaves	124.12
SRR3744769	leaf	no	mature	34.4095
SRR3744770	leaf	no	mature	35.9833
SRR3744771	leaf	no	mature	41.6487
SRR5405145	leaf	no	mature	35.4343
SRR6320561	leaf	no	mature	78.6754