Gene detail

Detail information of MD09G1070100 Annotation

Gene ID	Annotation
MD09G1070100	glutamate receptor 3.4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1070100	mRNA	Chr09	4822947	4829801	-

Sequences

CDS:

MD09G1070100

TCTAAACTGTTGAAAGCTAAAGCTTCAACGAATTTTGGCTATTCAGGTCCTTGTTATATTTGACCGGCAGGTGCAGAGATTTCTGTAGGCATGGAGGTATTGCTGATGAATAGGCCTACTGACCATGTATGCAAGACAACACTGTTTGCGTTGATCTTGTGTATGTGGGTGTCCATGCAAGTGATGGCTGGAACAGAAAATGCCACGCATTTGTCTGCAAGGCCAAGTTCTCTGAATATTGGAGCTCTGTTTACTTTCAATTCGGTTATTGGGAGGGCAGCCAAGCCGGCAATTTTAGCTGCAATTGATGATGTCAATTCTGATCAAAGCATTCTTCGCGGGACAAAATTGAACATTATTCTCCATGACACGAATTGCAGTGAATTTCTTGGAACTGTTGAAGCTATGGAGCTGATTAACAACGACGTGGTTGCTGCAGTCGGCCCACAATCCTCTGGAATAGCTCATGTCATATCCCATGTTGTTAATGAGCTCCATGTACCACTTCTATCATTTGGAGCAACAGACCCCTCCCTTGCTGCTCTCAAATACCCATATTTTGTCCGAACCACACAGAGTGACTATTTCCAAATGTATGCAGTTGCTGATTTAGTTGAGTATTTTGGATGGAGAGAAGTAATAGCAATCTTTGTAGATGATGATTATGGCCGAAATGGGATTTCTATACTAGCCGATGCCTTGGCAGTGAAGCGTTCTAAGATCTCATACAAGGCTGCCTTCTCTCCTGGAGCCCTCAAAAGCGATATCAATGAATTGTTGATGGGAGTGAACCTCATGGAATCTCGGGTTTATATTGTACATGTTCATCCCGACTCCGGTTTAACTATTTTTTCCATTGCCAAGGCACTTGGAATGATGACCAGTGGCTATGTCTGGATTGCGACGGATTGGCTTCCTTCCTATTTAGATTCACTAAATCCCCCTGGCCCTGACACAACGAATCTCTTACAAGGGGTTGTTGCTCTCCGTCATCATACCCCAGATACTGATCTGAAAAAGCGCTTTATGTCTAGATGGAGCAAATTGAAACATGAAGGGACTCCAAGCTTCAATTCTTATGCGCTTTATGCATACGACTCTATTTGGCTAGCAGCCCGTGCTCTTGATGTTTTCTTCAACGAAGGTGGGAATGTATCTTTCTCTAATTACCCAAGGTTGAAAGACACAAATCGAAGCACACTGCATTTAACATCACTCCGCATTTTTTATGGAGGCCAAAAATATCTACAGACGATTCTTAAGATGAACTTCACAGGTATAAGCGGTCAGATTGAGTTTGATCAAGATAAATATCTAGTTCGTCCAGCGTATGACATTCTGAATATTGGAGGAACTGGTTCTCGTAGAGTTGGCTATTGGTCAAATTCTACTGGTCTCTCGGTCATTGCTCCAGAGATATTATATAAGAAGCCATTCAATAGGAATACGACTGCTCAACTTTATAGTGTAATATGGCCTGGTGAAGTTACAGCTACACCTCGGGGATGGGTATTTCCCAACAACGGCAGGCCACTGCGAATTGGAGTGCCTTATCGAGTAAGTTACAAAGATTTTGTGGCTAAAGACAAGAGCCCTGCAGGGGTCAGAGGATACTGTATTGATGTCTTTGAAGCTGCTGTAAACTTGTTGCCGTATGCTGTGCCACGTACGTATATGTTGTATGGAGATGGTAAGAGGAATCCTGAGTACAGCAGTCTTGTAGCCCAGGTTGCGCAAAATAAATTTGATGCAGCTGTTGGAGATGTTACAATTACTAATAATAGGACAAGAATAGTTGATTTTACGCAGCCTTACATGGAATCGGGACTTGTTGTAGTTGTTCCTGTCAAAAAGGCAAAATCAAACCCTTGGGTTTTCCTCAAGCCGTTTACTTACCAGATGTGGTTGGTCACCGGTGCCTTCTTCCTTTTTGTGGGAGCTGTTGTTTGGATTCTTGAGCACCGGTTCAATCATGAGTTCCGTGGTCCACCAAGCCAACAGCTCATAACCATTTTTTGGTTAGTATGTCTTACATCATTATGGCCGTTGATAAGTGCCTATACAATATGTACTTCACGCTTGATCTTCCTGTATCTCGTGAATGCAACTCGTAATATTAACTACTTATATCCTTTGCGACTTGGACTTGGTGCAGGAGAGAACACTGTGAGCACCCTGGGACGGCTGGTGGTGATTATATGGTTATTTGTAGTGTTAATTATCAATTCTAGCTACACTGCTAGTTTGACTTCAATTCTTACAGTGCAACAGCTGACGTCACGGATTGAAGGGATTGATAGCTTGATATCAAGTAATGATCGAATCGGAGTTCAAGACGGGTCATTTGCTTGGAGGTATTTGGTTGATGAGATGAACATAGCGGAATCTAGACTTGTTAAGTTGAAAGACATGGAAGCCTATATTAAAGCCCTTACGGATGGACCAAGACGTGGTGGGGTAGCTGCCATCGTTGATGAGCTTCCTTACATTGAGTTGTTCATGTCCAGCACCAAATGTGCATTCAGGACTGTAGGGCTGGAGTTTACCAAAAGCGGATGGGGATTCGCCTTCCAAAAGGATTCTCCTCTTGCTGTTGACTTGTCGACAGCGATTCTTCAACTTTCAGAGAACGGTGATCTACAAAAGATCCATGATAAGTGGTTTAAGCATAACGAGTGCCCTACTCAACTCAATGACGTTGATGCAGACCTGCAGCTATCTCTAACAAGCTTTTGGGGCCTGTTTCTTATCTGCGGTATTGCATGCTTCCTTGCTCTTGCGGTGTTCTTCTGTAGAATCCTTTGTCAATACCGCAGATTTACCCCAGAGCCTGTGGAAGCGGACGCTGAGGAGATTGGACCTACCAACACGAGATCTAGACGCTCACTTGGGTCAACCAGTTTCAAGGGTCTTATGGTCTTTGTAGATAAGAAAGAAGCAGAGATAAAGCACATGCTGAAGCGAAAGACTAGTGATAGTAAGCACGAAGCTAGCCCGAGCGCTGATGGGCAGCTGCATTCCCTTCGTGAGGAAGATTTGCCTTCGGCGGGTTGATTCTGCAGTGCTCCCTCAGC

Protein:

Gene family

Gene family	Subfamily
Transporter family	GIC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G05200.2	1	ATGLR3.4;GLR3.4;GLUR3\|glutamate receptor 3.4;
Arabidopsis thaliana	AT1G05200.1	1	ATGLR3.4;GLR3.4;GLUR3\|glutamate receptor 3.4;
Vitis vinifera	GSVIVT01030602001	1	glutamate receptor 3.4
Solanum lycopersicum	Solyc05g045650.2.1	1	glutamate receptor 3.4
Nicotiana benthamiana	Niben101Scf00891g04008.1	1	Glutamate receptor 3.4
Nicotiana benthamiana	Niben101Scf31689g00006.1	1	Glutamate receptor 3.4
Oryza sativa	LOC_Os07g01310.1	1	"glutamate receptor, putative, expressed"
Oryza sativa	LOC_Os07g33790.1	1	"glutamate receptor 3.4 precursor, putative, expressed"
Zea mays	GRMZM2G057459_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component
GO:0007186	G-protein coupled receptor signaling pathway	biological_process
GO:0004970	ionotropic glutamate receptor activity	molecular_function
GO:0006810	transport	biological_process
GO:0005234	extracellular-glutamate-gated ion channel activity	molecular_function
GO:0004965	G-protein coupled GABA receptor activity	molecular_function

KEGG

KO	Description	Enzyme
K05387	"glutamate receptor, ionotropic, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00497.16	SBP_bac_3	537	859	3.60E-25

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.191751
SRR5252888	dormant buds	no	dormant buds(0 month)	3.56011
SRR5252889	dormant buds	no	dormant buds(0 month)	3.76557
SRR5252886	dormant buds	no	dormant buds(1 months)	1.90072
SRR5252887	dormant buds	no	dormant buds(1 months)	2.12458
SRR5252884	dormant buds	no	dormant buds(2 months)	2.11365
SRR5252882	dormant buds	no	dormant buds(3 months)	0.948365
SRR5252883	dormant buds	no	dormant buds(3 months)	1.48932
SRR5252880	dormant buds	no	dormant buds(4 months)	0.77945
SRR5252881	dormant buds	no	dormant buds(4 months)	1.05055
SRR5252878	bud break	no	bud break	2.55088
SRR5252879	bud break	no	bud break	2.55194
SRR3744766	flower	no	mature	1.1089
SRR3744767	flower	no	mature	1.40197
SRR3744768	flower	no	mature	1.33111
SRR6308190	stigmas	no	open flowers	0.13407
SRR6308181	styles	no	open flowers	0.153963
SRR6308188	filaments	no	open flowers	0.46127
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.0596281
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.13542
SRR6308194	sepals	no	open flowers	1.62642
SRR6308193	receptacles	no	open flowers	0.381545
SRR6308189	ovaries	no	open flowers	0.992803
SRR3384922	fruit	no	1 week after full bloom	0.835532
SRR3384921	fruit	no	2 week after full bloom	1.80882
SRR3384920	fruit	no	3 week after full bloom	1.7669
SRR3384919	fruit	no	4 week after full bloom	2.04619
SRR3384923	fruit	no	5 week after full bloom	2.29574
SRR3384918	fruit	no	6 week after full bloom	1.55772
SRR3384917	fruit	no	8 week after full bloom	1.22989
SRR3384916	fruit	no	10 week after full bloom	1.11841
SRR3384915	fruit	no	12 week after full bloom	0.594132
SRR3384914	fruit	no	14 week after full bloom	0.602415
SRR3384913	fruit	no	16 week after full bloom	0.586145
SRR3384912	fruit	no	18 week after full bloom	0.376361
SRR3384911	fruit	no	19 week after full bloom	0.583113
SRR3384910	fruit	no	20 week after full bloom	0.456561
SRR768128	whole fruit	no	25 days post anthesis	4.12599
SRR768129	whole fruit	no	35 days post anthesis	2.80158
SRR768130	whole fruit	no	60 days post anthesis	4.40716
SRR768131	whole fruit	no	87 days post anthesis	2.35703
SRR7343308	immature fruit flesh	no	immature	11.5592
SRR7343309	immature fruit flesh	no	immature	10.1442
SRR6320494	ripe fruit flesh	no	mature	0.296465
SRR5405143	ripe fruit peel	no	mature	0.686229
SRR6320572	ripe fruit peel	no	mature	0.388033
SRR7403504	fruit	uninfected	mature	0.174246
SRR7403506	fruit	uninfected	mature	0.138049
SRR7403507	fruit	uninfected	mature	0.200334
SRR7403500	fruit	infected with penicillium expansum	mature	0.150116
SRR7403501	fruit	infected with penicillium expansum	mature	0.111384
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.217281
SRR7403503	fruit	infected with penicillium expansum	mature	0.208016
SRR7403505	fruit	infected with penicillium expansum	mature	0.0934909
SRR1613973	Central seeds	no	20DAPF	0.0312851
SRR1613974	Central seeds	no	20DAPF	0.0537339
SRR1613975	Central seeds	no	20DAPF	0.0218857
SRR1613976	Lateral seeds	no	20DAPF	0.080573
SRR1613977	Lateral seeds	no	20DAPF	0.0311649
SRR1613978	Lateral seeds	no	20DAPF	0.0408951
SRR3744786	stem	no	mature	1.54479
SRR3744787	stem	no	mature	1.3042
SRR3744772	stem	no	mature	1.26565
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.391446
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.21335
SRR1089478	leaf	Virus-free	plantlets	0.503796
SRR1089477	leaf	ASGV-infected	plantlets	0.820658
SRR767660	leaf	uninfected	fully developed	0.613564
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.482929
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.00173
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.46533
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.1716
SRR6308182	young leaf	no	immature leaves	1.53859
SRR3744769	leaf	no	mature	4.23398
SRR3744770	leaf	no	mature	3.52064
SRR3744771	leaf	no	mature	4.18956
SRR5405145	leaf	no	mature	11.9916
SRR6320561	leaf	no	mature	7.61599