Gene ID | Annotation |
---|---|
MD09G1075600 | auxin transport protein (BIG) |
Network Category | Global Network | Conditional network (different tissues and developmental stages) |
---|---|---|
Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
Method | Module ID | Function Annotation |
---|---|---|
-- | -- | -- |
more details in UCSC | details of chromatin state |
Gene | Type | Chr | Start | End | Strand |
---|---|---|---|---|---|
MD09G1075600 | mRNA | Chr09 | 5326538 | 5345200 | + |
CDS: |
MD09G1075600 |
Protein: |
MD09G1075600 |
Gene family | Subfamily |
---|---|
-- | -- |
Species | Gene ID | Score of Inparanoid | Annotation |
---|---|---|---|
Arabidopsis thaliana | AT3G02260.1 | 1 | ASA1;BIG;CRM1;DOC1;LPR1;TIR3;UMB1|ATTENUATED SHADE AVOIDANCE 1;BIG;CORYMBOSA1;DARK OVER-EXPRESSION OF CAB 1;LOW PHOSPHATE-RESISTANT ROOT 1;TRANSPORT INHIBITOR RESPONSE 3;UMBRELLA 1 |
Prunus persica | Prupe.3G248400.1.p | 1 | auxin transport protein (BIG) |
Prunus persica | Prupe.3G248400.3.p | 0.766 | auxin transport protein (BIG) |
Pyrus communis | PCP011557.1 | 1 | - |
Pyrus x bretschneideri | Pbr022197.1 | 1 | - |
Rubus occidentalis | Ro06_G04884 | 1 | - |
Fragaria vesca | mrna04218.1 | 1 | auxin transport protein (BIG) |
Vitis vinifera | GSVIVT01036538001 | 1 | auxin transport protein (BIG) |
Solanum lycopersicum | Solyc02g089260.2.1 | 1 | auxin transport protein (BIG) |
Populus trichocarpa | Potri.017G101100.2 | 1 | auxin transport protein (BIG) |
Nicotiana benthamiana | Niben101Scf06560g02002.1 | 1 | Auxin transport protein BIG |
Oryza sativa | LOC_Os09g07300.1 | 1 | "BIG, putative, expressed" |
GO term | Description | Category |
---|---|---|
GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
KO | Description | Enzyme |
---|---|---|
K10691 | E3 ubiquitin-protein ligase UBR4 | EC:2.3.2.27 |
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF00569.13 | ZZ | 2602 | 2634 | 7.50E-09 |