Gene detail

Detail information of MD09G1105900 Annotation

Gene ID	Annotation
MD09G1105900	Peroxidase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0025	ribonuclease T2 activity stamen filament development potassium:sodium symporter activity potassium ion transmembrane transport extracellular region

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1105900	mRNA	Chr09	7678059	7679599	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G05260.1	1	RCI3;RCI3A\|RARE COLD INDUCIBLE GENE 3;
Pyrus communis	PCP033161.1	1	-
Pyrus x bretschneideri	Pbr018080.1	1	-
Rosa multiflora	Rmu_sc0002023.1_g000018.1	1	-
Rosa multiflora	Rmu_sc0029076.1_g000002.1	1	-
Fragaria vesca	mrna23913.1	1	Peroxidase superfamily protein
Solanum lycopersicum	Solyc07g052550.1.1	0.826	Peroxidase superfamily protein
Solanum lycopersicum	Solyc07g052530.2.1	0.935	Peroxidase superfamily protein
Solanum lycopersicum	Solyc07g052540.2.1	1	Peroxidase superfamily protein
Populus trichocarpa	Potri.007G122100.1	1	Peroxidase superfamily protein
Populus trichocarpa	Potri.017G037900.1	0.6	Peroxidase superfamily protein
Nicotiana benthamiana	Niben101Scf07388g00016.1	1	Peroxidase 3
Nicotiana benthamiana	Niben101Scf01037g02006.1	1	Peroxidase 3
Nicotiana benthamiana	Niben101Scf32927g00004.1	0.702	Peroxidase 3
Nicotiana benthamiana	Niben101Scf20924g01011.1	0.618	Peroxidase 3
Oryza sativa	LOC_Os06g46799.1	1	"peroxidase precursor, putative, expressed"
Oryza sativa	LOC_Os02g06630.1	1	"peroxidase precursor, putative, expressed"
Zea mays	GRMZM2G085967_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0020037	heme binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006979	response to oxidative stress	biological_process
GO:0004601	peroxidase activity	molecular_function

KEGG

KO	Description	Enzyme
K00430	peroxidase	EC:1.11.1.7

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.50456
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.102506
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.238926
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.38041
SRR5252879	bud break	no	bud break	0.843667
SRR3744766	flower	no	mature	0.121884
SRR3744767	flower	no	mature	0.249664
SRR3744768	flower	no	mature	0.216793
SRR6308190	stigmas	no	open flowers	3.30124
SRR6308181	styles	no	open flowers	17.9002
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.165473
SRR6308194	sepals	no	open flowers	2.56656
SRR6308193	receptacles	no	open flowers	1.02323
SRR6308189	ovaries	no	open flowers	36.7663
SRR3384922	fruit	no	1 week after full bloom	0.627058
SRR3384921	fruit	no	2 week after full bloom	0.484822
SRR3384920	fruit	no	3 week after full bloom	0.683031
SRR3384919	fruit	no	4 week after full bloom	0.157755
SRR3384923	fruit	no	5 week after full bloom	0.225036
SRR3384918	fruit	no	6 week after full bloom	0.417518
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.0783072
SRR3384915	fruit	no	12 week after full bloom	0.277957
SRR3384914	fruit	no	14 week after full bloom	0.179719
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0952642
SRR3384910	fruit	no	20 week after full bloom	0.149178
SRR768128	whole fruit	no	25 days post anthesis	5.69709
SRR768129	whole fruit	no	35 days post anthesis	0.826296
SRR768130	whole fruit	no	60 days post anthesis	1.58327
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.478723
SRR1613974	Central seeds	no	20DAPF	0.730875
SRR1613975	Central seeds	no	20DAPF	0.744208
SRR1613976	Lateral seeds	no	20DAPF	0.78281
SRR1613977	Lateral seeds	no	20DAPF	0.605568
SRR1613978	Lateral seeds	no	20DAPF	0.579421
SRR3744786	stem	no	mature	3.01014
SRR3744787	stem	no	mature	1.78002
SRR3744772	stem	no	mature	2.55973
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.384029
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.15699
SRR1089478	leaf	Virus-free	plantlets	0.513882
SRR1089477	leaf	ASGV-infected	plantlets	0.664355
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.374294
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.450119
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.221424
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.170466
SRR3744770	leaf	no	mature	0.0451092
SRR3744771	leaf	no	mature	0.0445205
SRR5405145	leaf	no	mature	0.305908
SRR6320561	leaf	no	mature	0