Gene detail

Detail information of MD09G1108500 Annotation

Gene ID	Annotation
MD09G1108500	MATE efflux family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1108500	mRNA	Chr09	8028935	8035244	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	MOP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G21690.1	1	MATE efflux family protein
Prunus persica	Prupe.3G217600.1.p	1	MATE efflux family protein
Pyrus communis	PCP014776.1	1	-
Pyrus x bretschneideri	Pbr018097.1	1	-
Rosa multiflora	Rmu_sc0004800.1_g000007.1	1	-
Rubus occidentalis	Ro06_G06754	1	-
Vitis vinifera	GSVIVT01030590001	1	MATE efflux family protein
Solanum lycopersicum	Solyc12g005850.1.1	1	MATE efflux family protein
Populus trichocarpa	Potri.014G153100.1	1	MATE efflux family protein
Nicotiana benthamiana	Niben101Scf06323g00010.1	1	MATE efflux family protein LENGTH=506
Oryza sativa	LOC_Os03g37490.1	1	"MATE efflux family protein, putative, expressed"
Oryza sativa	LOC_Os07g33310.1	1	"MATE efflux family protein, putative, expressed"
Zea mays	GRMZM5G842695_P01	1	Transparent testa 12 protein

Gene Ontology

GO term	Description	Category
GO:0006855	drug transmembrane transport	biological_process
GO:0016020	membrane	cellular component
GO:0015238	drug transmembrane transporter activity	molecular_function
GO:0015297	antiporter activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.582521
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0523441
SRR5252886	dormant buds	no	dormant buds(1 months)	0.573982
SRR5252887	dormant buds	no	dormant buds(1 months)	0.244012
SRR5252884	dormant buds	no	dormant buds(2 months)	0.487109
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0977089
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.448535
SRR3744767	flower	no	mature	0.320965
SRR3744768	flower	no	mature	0.393774
SRR6308190	stigmas	no	open flowers	0.0777568
SRR6308181	styles	no	open flowers	0.13379
SRR6308188	filaments	no	open flowers	1.60647
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.103639
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.0858466
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.132703
SRR6308189	ovaries	no	open flowers	0.161789
SRR3384922	fruit	no	1 week after full bloom	0.320149
SRR3384921	fruit	no	2 week after full bloom	0.0990118
SRR3384920	fruit	no	3 week after full bloom	0.0435908
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.184655
SRR3384916	fruit	no	10 week after full bloom	0.0399803
SRR3384915	fruit	no	12 week after full bloom	0.0473043
SRR3384914	fruit	no	14 week after full bloom	0.0458784
SRR3384913	fruit	no	16 week after full bloom	0.108074
SRR3384912	fruit	no	18 week after full bloom	0.202844
SRR3384911	fruit	no	19 week after full bloom	0.0972756
SRR3384910	fruit	no	20 week after full bloom	0.114246
SRR768128	whole fruit	no	25 days post anthesis	0.220319
SRR768129	whole fruit	no	35 days post anthesis	0.544372
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.305329
SRR7343308	immature fruit flesh	no	immature	0.270135
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0254048
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	21.5364
SRR7403501	fruit	infected with penicillium expansum	mature	18.026
SRR7403508	fruit	infected with penicillium expansum	mature	18.4737
SRR7403502	fruit	infected with penicillium expansum	mature	13.3053
SRR7403503	fruit	infected with penicillium expansum	mature	14.6183
SRR7403505	fruit	infected with penicillium expansum	mature	14.9394
SRR1613973	Central seeds	no	20DAPF	9.71381
SRR1613974	Central seeds	no	20DAPF	8.56963
SRR1613975	Central seeds	no	20DAPF	9.73587
SRR1613976	Lateral seeds	no	20DAPF	6.91661
SRR1613977	Lateral seeds	no	20DAPF	7.38035
SRR1613978	Lateral seeds	no	20DAPF	6.73874
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0634888
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	0.264
SRR1089477	leaf	ASGV-infected	plantlets	0.273043
SRR767660	leaf	uninfected	fully developed	0.267824
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.12928
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.116237
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0.0444015
SRR5405145	leaf	no	mature	0.469728
SRR6320561	leaf	no	mature	0