Gene detail

Detail information of MD09G1156000 Annotation

Gene ID	Annotation
MD09G1156000	protein phosphatase 5.2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0970	pre-mRNA-splicing factor 18 spliceosomal complex RNA splicing tetrapyrrole binding AP-1 complex subunit mu serine/threonine-protein phosphatase 5 [EC:3.1.3.16] integral component of endoplasmic reticulum membrane clathrin adaptor complex clathrin vesicle coat chloroplast-nucleus signaling pathway red or far-red light signaling pathway nucleocytoplasmic transport nuclear envelope

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1156000	mRNA	Chr09	12430531	12438867	+

Sequences

CDS:

MD09G1156000

CTCTTGCCCCAAATATATATAGTTTTGCCCTGAAGTCTAAAGCCTTTGTACAATGAACTAGACCAAGTCCCCTTCACTCCTAACAACAGCTTCTGATATATCTATCTATCTGATTCCAAAGTCCTATAAAATTAGGGTTTCTCTCTCCCTCCAGCTCTCTCTCTGGGTATCTCTCTCTCTCTCTGCCGAGATCCGATACTGTCTGCTGATGCAATAGACGACAAAGTTTATGCCAATCATGGAAACTGAGAATGGTAATGTTAAGCAAGCTGAAGATGCTAAACTACTTGCCAATGAAGCATATAAAGCTCATAAATTTGCTCAAGCTATTGATCTGTATACACAAGCGATTGAACTAAACAGTCAGAATGCTGTATACTGGGCCAATCGTTCAATTGCCCACCTTAAACTGGAGGAATATGGTAGCGCCATACAAGATGCTTCCAAGGCTATTGAAGTTGATCCCAAATATTCAAAGGGATACTACAGACGAGGTGCAGCTTATCTTGCTATGGGGAAATTTAAAGAAGCTTTAAAGGATTTTCAGCAGGTCAAAAGAATCTGTCCAAATGATCCTGATGCTACCAAGAAATTGAAGGAATGTGAGAAAGCAGTGATGAAGCTTAAATTTGCTGAAGCAATATCTGCACCGGAGGCTGAAAGGCGTCCTGTAGCTGATTCTATTAATTATCGTTCTATAGATGTGGAACCACAATATGCCGGTGCAAGGATAGAAGGGGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGAGGATTTCAAGAATCAGAAGAATTTACACCAACGATATGCGTTCCAAATTGTCTTACAGACGAAAGAAATGCTGCAAGCCATGCCTTCTCTGGTTGATATAAATATTCCTAAGGGCAATCATTTTACTGTTTGTGGTGACGTACATGGGCAGTTCTATGATCTTCTAAATATTTTTGAGCTTAACGGGCTTCCTTCAGATGAGAATCCATATCTATTCAATGGAGATTTTGTGGACAGGGGATCTTTTTCTTTGGAGGTGATCCTAACATTGTTTGCTTTTAAGTGCATGTCTCCATCAGCAATATATCTCGCAAGAGGAAATCATGAGAGCAAGAGCATGAATAGGATTTATGGTTTTGAGGGCGAGGTCCAGTCCAAATTAAGCGACAAGTTTGTGGAGCTGTTTGCTGAAGTTTTTTGTTGTCTACCGCTGGCTCATGTAATAAATGGGAAGGTTTTTGTAGTCCATGGGGGTCTTTTCAGCGTTGATGGAGTGAAACTCAGCGACATTAGAGCAATTAATCGGTTTTGTGAACCTCCTGAGGAAGGGTTAATGTGTGAATTGCTGTGGAGTGATCCACAGCCTGCACCTGGAAGAGGACCAAGCAAGCGAGGTGTAGGTCTTTCTTTTGGTGGCGATGTGACAAAAAGATTTTTGCAGGAAAACAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGATTGAGCATGATGGGAAACTTATCACTGTCTTTTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAGGGTGCCTTTATCCGTTTTGAAGCACCAGATTTGAAGCCTAACATTGTTACTTTCTCAGCAGTGCCACATCCTGACGTCAAGCCAATGGCATATGCGAACAACTTCCTCCGAATGTTTCAGTAATTTATATGTCCGAGTGGAAGTGCCAACACAGTTGAATACGACTTTGCTTCAGAAGCCTACCGGAGAAGGGGTTGGTGCACGTTGACAAATGCAGTATCTTGTCGCGATTACTTCCCGTAAAGATGGTTCTTTTCATTTTACGTATCTTTCTCGTTCTTGTTCTTCTCACGACTAGGACGAGAATATTTCAGGCATTTTCTTTGAAGTCGTTTGTGTTCTTATGCTTGCTCCTGGAAGCCAGGTTTAGAGACGAAATTCATAACCTTATGGAGTATGACTGCCAGCTAAAGCTCATGGCGTTTTCTTCGTGTTTATTTTTATGAATTTTGATGATTTTCTATATTTTTTTCGCTGGTATTTTGGAGTAAATATGTCATCAAATTTGTTCTTTTTGTTATCTGAATTTGTTGCAACCATATAACTTGTAAATATTTGAATTTATACCTGATTTTGATCTGGAAAATATCTTAAGTGCCTGCAATCAAGTTGTCTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G42810.1	1	AtPP5;PAPP5;PP5;PP5.2\|Arabidopsis thaliana protein phosphatase 5;Phytochrome-Associated Protein Phosphatase 5;PROTEIN PHOSPHATASE 5;protein phosphatase 5.2
Arabidopsis thaliana	AT2G42810.2	0.715	AtPP5;PAPP5;PP5;PP5.2\|Arabidopsis thaliana protein phosphatase 5;Phytochrome-Associated Protein Phosphatase 5;PROTEIN PHOSPHATASE 5;protein phosphatase 5.2
Prunus persica	Prupe.3G168900.2.p	1	protein phosphatase 5.2
Rosa multiflora	Rmu_sc0007617.1_g000014.1	1	-
Rubus occidentalis	Ro06_G26275	1	-
Fragaria vesca	mrna00579.1	1	protein phosphatase 5.2
Vitis vinifera	GSVIVT01000823001	1	protein phosphatase 5.2
Populus trichocarpa	Potri.014G141800.2	1	protein phosphatase 5.2
Nicotiana benthamiana	Niben101Scf02357g07009.1	1	Serine/threonine-protein phosphatase PP-X homolog 2
Oryza sativa	LOC_Os05g11550.1	1	"serine/threonine protein phosphatase 5, putative, expressed"
Zea mays	GRMZM2G126435_P01	1	Putative serine/threonine protein phosphatase superfamily protein; Serine/threonine-protein phosphatase 5

Gene Ontology

GO term	Description	Category
GO:0006470	protein dephosphorylation	biological_process
GO:0004721	phosphoprotein phosphatase activity	molecular_function
GO:0005737	cytoplasm	cellular component
GO:0005634	nucleus	cellular component
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K04460	serine/threonine-protein phosphatase 5	EC:3.1.3.16

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.24	Metallophos	221	413	4.50E-31

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	19.8882
SRR5252888	dormant buds	no	dormant buds(0 month)	28.2604
SRR5252889	dormant buds	no	dormant buds(0 month)	29.26
SRR5252886	dormant buds	no	dormant buds(1 months)	21.4537
SRR5252887	dormant buds	no	dormant buds(1 months)	28.3747
SRR5252884	dormant buds	no	dormant buds(2 months)	23.2236
SRR5252882	dormant buds	no	dormant buds(3 months)	27.1064
SRR5252883	dormant buds	no	dormant buds(3 months)	24.1868
SRR5252880	dormant buds	no	dormant buds(4 months)	25.1085
SRR5252881	dormant buds	no	dormant buds(4 months)	24.2284
SRR5252878	bud break	no	bud break	21.2978
SRR5252879	bud break	no	bud break	23.125
SRR3744766	flower	no	mature	16.7476
SRR3744767	flower	no	mature	17.545
SRR3744768	flower	no	mature	17.4505
SRR6308190	stigmas	no	open flowers	16.318
SRR6308181	styles	no	open flowers	20.3426
SRR6308188	filaments	no	open flowers	23.7386
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	17.2687
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	19.3066
SRR6308194	sepals	no	open flowers	21.0656
SRR6308193	receptacles	no	open flowers	18.9565
SRR6308189	ovaries	no	open flowers	22.5538
SRR3384922	fruit	no	1 week after full bloom	15.0808
SRR3384921	fruit	no	2 week after full bloom	13.5691
SRR3384920	fruit	no	3 week after full bloom	11.3323
SRR3384919	fruit	no	4 week after full bloom	16.4232
SRR3384923	fruit	no	5 week after full bloom	16.3181
SRR3384918	fruit	no	6 week after full bloom	14.7306
SRR3384917	fruit	no	8 week after full bloom	17.1263
SRR3384916	fruit	no	10 week after full bloom	19.2266
SRR3384915	fruit	no	12 week after full bloom	21.3736
SRR3384914	fruit	no	14 week after full bloom	19.2814
SRR3384913	fruit	no	16 week after full bloom	20.8701
SRR3384912	fruit	no	18 week after full bloom	21.3966
SRR3384911	fruit	no	19 week after full bloom	19.7543
SRR3384910	fruit	no	20 week after full bloom	23.5643
SRR768128	whole fruit	no	25 days post anthesis	12.3141
SRR768129	whole fruit	no	35 days post anthesis	19.354
SRR768130	whole fruit	no	60 days post anthesis	24.0205
SRR768131	whole fruit	no	87 days post anthesis	30.3244
SRR7343308	immature fruit flesh	no	immature	21.0853
SRR7343309	immature fruit flesh	no	immature	20.1383
SRR6320494	ripe fruit flesh	no	mature	38.3089
SRR5405143	ripe fruit peel	no	mature	23.6266
SRR6320572	ripe fruit peel	no	mature	17.4162
SRR7403504	fruit	uninfected	mature	32.6998
SRR7403506	fruit	uninfected	mature	31.1084
SRR7403507	fruit	uninfected	mature	30.4225
SRR7403500	fruit	infected with penicillium expansum	mature	39.611
SRR7403501	fruit	infected with penicillium expansum	mature	41.212
SRR7403508	fruit	infected with penicillium expansum	mature	42.9006
SRR7403502	fruit	infected with penicillium expansum	mature	34.4771
SRR7403503	fruit	infected with penicillium expansum	mature	36.492
SRR7403505	fruit	infected with penicillium expansum	mature	34.6595
SRR1613973	Central seeds	no	20DAPF	27.184
SRR1613974	Central seeds	no	20DAPF	28.6346
SRR1613975	Central seeds	no	20DAPF	22.908
SRR1613976	Lateral seeds	no	20DAPF	24.5254
SRR1613977	Lateral seeds	no	20DAPF	23.1238
SRR1613978	Lateral seeds	no	20DAPF	24.63
SRR3744786	stem	no	mature	21.2768
SRR3744787	stem	no	mature	22.9328
SRR3744772	stem	no	mature	22.873
SRX765691	seedling shoot apex	no	4-6 week old seedling	17.3202
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	15.1509
SRR1089478	leaf	Virus-free	plantlets	14.4147
SRR1089477	leaf	ASGV-infected	plantlets	14.6436
SRR767660	leaf	uninfected	fully developed	10.4683
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.732
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.93557
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	12.4668
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.4155
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.6803
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.32947
SRR6308182	young leaf	no	immature leaves	20.6121
SRR3744769	leaf	no	mature	15.4057
SRR3744770	leaf	no	mature	16.1988
SRR3744771	leaf	no	mature	16.5457
SRR5405145	leaf	no	mature	11.3192
SRR6320561	leaf	no	mature	17.001