Gene detail

Detail information of MD09G1173700 Annotation

Gene ID	Annotation
MD09G1173700	ARID/BRIGHT DNA-binding domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1173700	mRNA	Chr09	14726512	14733452	+

Sequences

CDS:

MD09G1173700

TTACTTTTAAATTTTTATTAAAATTTTTGGTGACTGAGAATTTTGATTTTATTTTTGGTGAGTTAGATTACGATAGATAGACAAAGATAAATAAATTAATCCTAACAGAAGTTGGGGTTGTTTTTTTATACGAATTTCTTTTTGGGGATTTGGATTTTACGGGCCTAGGGTTCTCTTTTCATACTTTACTCGTCTATTTTGTGCTTTTTTGTGATTGTAGAAGCTAAAGGACTCACTTGGGTCGTCGGTTCTTCACAATTCCTTATCTGGGTTGTTCGAGTTCTTCAATTTCCTCATCTGGGTCGGTGGGATTTTGTGATTTTTCCATAGTTCTTTATCAGGTTCGTTGATTCCCCACGTTTTCTCATTTGGGTCGTGGCTAATTTTTCTAATTTCAACAGTTTTTGGGTTGGAATCGAGGTATTTTCCCCCAAGTTTGCTTCCTTGAATGCTAGCTACAAGGTGAAATTTGATCAGGTTGGTGTGATTGGAATCCGAACTATGGTCCAAGTTGTGGCCTGGCTTCAGTGTTATAGTCTAGGGGATTTCAATGGTTTTCGGGTTTTAAATCTTCTGTGAGGAGCTTGAGCTACTTTGCTTAGCCAACTGTGTGGAAGCCTGCAGGAAATAATGTTTCATTCTCAGGGAGCTTCAAAGCACCCTTGTAGTCTGCTTGTGGTCAATTGTGCGGAAATTTCTGAAGAGAAACGTAATAAGGACACGGCAGATGATAAACTCAGATACCCGTTTCCGGAGTTGGTTTCCTCAGGGCGTTTGGAGGTTCAAACTCTGACCAAGCCAACCAAAGAGGAGTTATGTAAAATGCTTGAGTCATATAAGCCGAATCTTGTATACCTGCAAGGAGAACAGCTTGGCAATAATGAAATTGGTTCTCTTGTCTGGGAAGATGTCGACTTGTCGACTCCTGAAGCTATATCTGAGATCTTTGGTGCCACATTGCCCACAACTGTTTATTTGGAGGTTCCATATGGTGCAACATTGGCAGCAGCCATTCACTCAAAGGGGATTCCTTATGTGATATATTGGAGAAGTGAATTTTCTTCCTTTGCTGCTTGCCACTTTCGACATGCTTTACTTTCAGTGATACAGAGTTCATCAACTCATACGTGGGATGCTTTCCAACTTGCATACGCTTCCTTTAGACTTTACTGTGTAGAAAACAACCATCTTGTTCCTGCTAACATATATAAATCTAGTGCGGAGCTGGGGCCATGTCTTCTTGGTGACCGTATAAAAATCAACGTTGATCTTCCTGAGGCAGACATGGAAGAAGATGAAAAAGGTTCCTTGGGTACTCTCCCTGCTATAAAGATACATGATGATGATGTGACCTTGAGGTTTCTTGTTTGTGGCGAGCCGTCCACATTGGATGCAAGCTTATTAGAACCTTTGGAGGATGGTCTCAATGCCCTCTTAAACATTGAAATGCGTGGGAGCAAGCTTCATGGAAAATTTAGTGCTCCTCCACCGCCTCTTCAGGCTGGGACTTTTTCTCGTGGTGTCGTGACTATGCGATGTGATGTATCAACTTGTAGTTCTGCGCACATATCACTTCTTGTGTCGGGCAGTGCTCAAACTTGCTTTGATGATCAGCTCTTAGAGAATCATATAAAGCATGAAATTATCGAAGAGAGTCAACTTGTACGTGCATTGCCCAAAGATGACGAAACCAAAGCACCTCTATCTGAACCACGAAAGTCTGCGTCAATTGCATGTGGGGCTACAGTATTTGAAGTTAGCATGAAGGTTCCTGCATGGGCTTCACAGGTTTTGAGGCAGCTCGCACCTGATGTTTCTTATCACAGTTTAGTTGCACTGGGCATTGCCAGCATTCAGGGATTACCTGTGGCTTCTTTTGAAAAAGATGATGCTGATCGCCTTCTTTTCTTCAGTTCCAGTCTGGGGAAAGATGGTAAATCAAACGACTTGAGTCTCAGCAGCCTTCCTACTTGGTTGAGACCACCTCCTCCTAGTAGGAAGAGATCTCAACCATGCCAAGAGACATGCCTGGGTTCTCTTGACGGCCAGGGGCTTCCACGTTTACCTGCTTCTAAAATTGATGAAGACAACAGAGTTGCTGGAGCAATGAATGGGGTTAGCACATCTTTCCTTCCAGCCAGGCAAAGATTGAAAATAGCCGCAATGAGGCCCATTCCTCATGTTCGTCGTCCTAAAATGACACCCTTTTCTGGAATGTCTGAGGTAGATGGGCATGAAGGAGGCCAAGTCAAGGCTCATATGCCTCCTCCTCCTCCACCCACAAAGCTCAGTATTGTTGGATTAACTCCTACAACACAACGAAAATCATACTCAAGCTCTTCTCAGGCTAAGCAGATTATTTCCTTGAATCCTTTGCCATTAAAGAAACATGGTTGTGGTAGAAGCCCAATACATTCTTGCTTAGAGGAGGAGTTTTTGAAGGATGTAATGCAGTTTCTAATTCTCCGAGGACATAATCGGCTCATTCCCCAAGGTGGACTCGCTGAGTTTCCAGATGCCATTCTCAATGGAAAGCGTCTTGACCTGTACAACTTATATAAAGAGGTGGTTACGAGAGGAGGCTTTCATGTTGGCAATGGCATCAACTGGAAAGGACAGATCTTCTCAAAAATGCGCAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTTAAACGACACTACGAAACTTACCTTCTAGAATACGAATTGGCTCATGATGATGTAGATGGAGAGTGCTGCTTATTGTGTCACAGTAGTGCAGCAGGGGATTGGGTAAACTGTGGAATATGCGGTGAGTGGGCTCACTTTGGCTGCGACAGAAGGCAGGGACTTGGTGCTTTTAAGGATTATGCAAAAACAGATGGACTGGAGTACATATGTCCACATTGCAGCATCAGCAATTTCAAGAAGAAACCACAGAAAATTGCAAATGGATTTTCCCAAGGCTCAACAGTATCACGGCCACTGTAATTCAATTTTGCTCCTACAATATCATAATTAATATCATCTTCCTTTTGGCTCTCTGATTTGGAGGTTGCTTCCCTCCCTAATCTGGCACGAGAAGTTGATTTGTACGGCTGATTAGGCCTTAATTGCACGATGCTAAAATAGGAGACCAGAGACCGGGGGAGGACAACGGTAGAAAACAGCAAGTCTAGTAGAGCATACTAGTTAGCGTAGGTATTTCGTTTCGGGTGGGAAATTTCTGTCCCTTTTTAGCTCTACCATTTGTGTCAGTCTGTTTCTGTTTCCCCTTTGGGGTTGTTAAGGTTGGACAGTTAAGAAATCCCATCATTCAGAAAGGGTCGTTGTAATATAATGCCGCTATCTCTGTGAACATATACGACTTTATGTAGCGTTTAATGAAAGATTATGATTATACTGACCT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID
Epigenetic Regulators	ARID

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G43240.1	1	ARID/BRIGHT DNA-binding domain-containing protein
Prunus persica	Prupe.3G031800.2.p	1	ARID/BRIGHT DNA-binding domain-containing protein
Prunus persica	Prupe.3G031800.1.p	1	ARID/BRIGHT DNA-binding domain-containing protein
Pyrus communis	PCP001251.1	1	-
Pyrus x bretschneideri	Pbr029052.1	1	-
Rosa multiflora	Rmu_sc0000308.1_g000019.1	1	-
Fragaria vesca	mrna05453.1	1	ARID/BRIGHT DNA-binding domain-containing protein
Vitis vinifera	GSVIVT01016680001	1	ARID/BRIGHT DNA-binding domain-containing protein
Solanum lycopersicum	Solyc12g049570.1.1	1	ARID/BRIGHT DNA-binding domain-containing protein
Populus trichocarpa	Potri.018G064500.1	1	ARID/BRIGHT DNA-binding domain-containing protein
Nicotiana benthamiana	Niben101Scf05827g06015.1	1	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=747
Nicotiana benthamiana	Niben101Scf12339g01014.1	0.819	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=747
Oryza sativa	LOC_Os09g26390.1	1	"AT-rich interaction region, putative, expressed"
Zea mays	GRMZM2G140156_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.17	ARID	599	696	1.40E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.92419
SRR5252888	dormant buds	no	dormant buds(0 month)	4.93265
SRR5252889	dormant buds	no	dormant buds(0 month)	6.59951
SRR5252886	dormant buds	no	dormant buds(1 months)	5.47168
SRR5252887	dormant buds	no	dormant buds(1 months)	5.81532
SRR5252884	dormant buds	no	dormant buds(2 months)	5.39249
SRR5252882	dormant buds	no	dormant buds(3 months)	6.30977
SRR5252883	dormant buds	no	dormant buds(3 months)	4.50186
SRR5252880	dormant buds	no	dormant buds(4 months)	5.64749
SRR5252881	dormant buds	no	dormant buds(4 months)	6.12979
SRR5252878	bud break	no	bud break	6.37175
SRR5252879	bud break	no	bud break	4.88519
SRR3744766	flower	no	mature	6.77423
SRR3744767	flower	no	mature	7.91227
SRR3744768	flower	no	mature	6.86734
SRR6308190	stigmas	no	open flowers	5.3404
SRR6308181	styles	no	open flowers	4.98078
SRR6308188	filaments	no	open flowers	4.45476
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.28723
SRR6308192	pollen	no	open flowers	30.9761
SRR6308191	petals	no	open flowers	3.99223
SRR6308194	sepals	no	open flowers	4.0833
SRR6308193	receptacles	no	open flowers	5.03969
SRR6308189	ovaries	no	open flowers	4.43279
SRR3384922	fruit	no	1 week after full bloom	3.0001
SRR3384921	fruit	no	2 week after full bloom	3.29816
SRR3384920	fruit	no	3 week after full bloom	3.61894
SRR3384919	fruit	no	4 week after full bloom	3.67357
SRR3384923	fruit	no	5 week after full bloom	3.29727
SRR3384918	fruit	no	6 week after full bloom	3.91088
SRR3384917	fruit	no	8 week after full bloom	3.1859
SRR3384916	fruit	no	10 week after full bloom	3.91337
SRR3384915	fruit	no	12 week after full bloom	3.97572
SRR3384914	fruit	no	14 week after full bloom	4.02046
SRR3384913	fruit	no	16 week after full bloom	3.60003
SRR3384912	fruit	no	18 week after full bloom	3.84623
SRR3384911	fruit	no	19 week after full bloom	3.96317
SRR3384910	fruit	no	20 week after full bloom	3.41531
SRR768128	whole fruit	no	25 days post anthesis	5.42957
SRR768129	whole fruit	no	35 days post anthesis	3.04335
SRR768130	whole fruit	no	60 days post anthesis	4.84213
SRR768131	whole fruit	no	87 days post anthesis	5.80019
SRR7343308	immature fruit flesh	no	immature	6.08686
SRR7343309	immature fruit flesh	no	immature	5.24211
SRR6320494	ripe fruit flesh	no	mature	4.25996
SRR5405143	ripe fruit peel	no	mature	4.92612
SRR6320572	ripe fruit peel	no	mature	4.99805
SRR7403504	fruit	uninfected	mature	4.56278
SRR7403506	fruit	uninfected	mature	4.84745
SRR7403507	fruit	uninfected	mature	4.83988
SRR7403500	fruit	infected with penicillium expansum	mature	5.59313
SRR7403501	fruit	infected with penicillium expansum	mature	6.40006
SRR7403508	fruit	infected with penicillium expansum	mature	5.65905
SRR7403502	fruit	infected with penicillium expansum	mature	5.07197
SRR7403503	fruit	infected with penicillium expansum	mature	5.914
SRR7403505	fruit	infected with penicillium expansum	mature	5.42789
SRR1613973	Central seeds	no	20DAPF	4.31242
SRR1613974	Central seeds	no	20DAPF	5.04243
SRR1613975	Central seeds	no	20DAPF	3.93065
SRR1613976	Lateral seeds	no	20DAPF	3.92781
SRR1613977	Lateral seeds	no	20DAPF	3.94203
SRR1613978	Lateral seeds	no	20DAPF	4.5415
SRR3744786	stem	no	mature	8.50329
SRR3744787	stem	no	mature	7.44855
SRR3744772	stem	no	mature	9.02647
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.8196
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.44284
SRR1089478	leaf	Virus-free	plantlets	2.57874
SRR1089477	leaf	ASGV-infected	plantlets	2.80744
SRR767660	leaf	uninfected	fully developed	0.688766
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.24304
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.6034
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.593054
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.39684
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.13988
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.1658
SRR6308182	young leaf	no	immature leaves	6.19262
SRR3744769	leaf	no	mature	9.36254
SRR3744770	leaf	no	mature	9.4005
SRR3744771	leaf	no	mature	9.37756
SRR5405145	leaf	no	mature	3.8565
SRR6320561	leaf	no	mature	5.05665