Gene detail

Detail information of MD09G1175600 Annotation

Gene ID	Annotation
MD09G1175600	40s ribosomal protein SA

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1175600	mRNA	Chr09	14971994	14974381	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP002399.1	1	-
Pyrus x bretschneideri	Pbr029064.1	1	-
Fragaria vesca	mrna02033.1	1	40s ribosomal protein SA B
Vitis vinifera	GSVIVT01016695001	1	40s ribosomal protein SA B
Solanum lycopersicum	Solyc03g019780.2.1	1	40s ribosomal protein SA B
Populus trichocarpa	Potri.015G112900.3	1	40s ribosomal protein SA
Populus trichocarpa	Potri.003G071200.1	1	40s ribosomal protein SA B
Populus trichocarpa	Potri.001G164000.1	0.7	40s ribosomal protein SA
Nicotiana benthamiana	Niben101Scf00338g08013.1	1	40S ribosomal protein S0
Nicotiana benthamiana	Niben101Scf06825g03009.1	0.859	40S ribosomal protein SA
Oryza sativa	LOC_Os03g08440.1	1	"ribosomal protein S2, putative, expressed"
Oryza sativa	LOC_Os07g42450.1	1	"ribosomal protein S2, putative, expressed"
Zea mays	GRMZM2G126821_P01	1	-
Zea mays	GRMZM2G092719_P01	0.853	-
Zea mays	GRMZM2G099657_P01	0.828	-
Zea mays	GRMZM2G145308_P01	0.77	-

Gene Ontology

GO term	Description	Category
GO:0015935	small ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02998	small subunit ribosomal protein SAe	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	72.5773
SRR5252888	dormant buds	no	dormant buds(0 month)	70.2655
SRR5252889	dormant buds	no	dormant buds(0 month)	69.4668
SRR5252886	dormant buds	no	dormant buds(1 months)	66.4956
SRR5252887	dormant buds	no	dormant buds(1 months)	52.3848
SRR5252884	dormant buds	no	dormant buds(2 months)	82.4416
SRR5252882	dormant buds	no	dormant buds(3 months)	91.9903
SRR5252883	dormant buds	no	dormant buds(3 months)	117.527
SRR5252880	dormant buds	no	dormant buds(4 months)	111.904
SRR5252881	dormant buds	no	dormant buds(4 months)	105.789
SRR5252878	bud break	no	bud break	93.2623
SRR5252879	bud break	no	bud break	114.348
SRR3744766	flower	no	mature	44.3774
SRR3744767	flower	no	mature	45.3797
SRR3744768	flower	no	mature	44.714
SRR6308190	stigmas	no	open flowers	19.8597
SRR6308181	styles	no	open flowers	27.1939
SRR6308188	filaments	no	open flowers	61.6115
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	15.7006
SRR6308192	pollen	no	open flowers	8.2234
SRR6308191	petals	no	open flowers	55.9054
SRR6308194	sepals	no	open flowers	43.8914
SRR6308193	receptacles	no	open flowers	75.7481
SRR6308189	ovaries	no	open flowers	41.1885
SRR3384922	fruit	no	1 week after full bloom	110.122
SRR3384921	fruit	no	2 week after full bloom	101.807
SRR3384920	fruit	no	3 week after full bloom	87.1922
SRR3384919	fruit	no	4 week after full bloom	76.7169
SRR3384923	fruit	no	5 week after full bloom	60.8176
SRR3384918	fruit	no	6 week after full bloom	65.1062
SRR3384917	fruit	no	8 week after full bloom	67.0855
SRR3384916	fruit	no	10 week after full bloom	84.6525
SRR3384915	fruit	no	12 week after full bloom	98.535
SRR3384914	fruit	no	14 week after full bloom	85.1773
SRR3384913	fruit	no	16 week after full bloom	65.9831
SRR3384912	fruit	no	18 week after full bloom	72.1364
SRR3384911	fruit	no	19 week after full bloom	48.4539
SRR3384910	fruit	no	20 week after full bloom	50.9607
SRR768128	whole fruit	no	25 days post anthesis	80.2448
SRR768129	whole fruit	no	35 days post anthesis	84.6335
SRR768130	whole fruit	no	60 days post anthesis	61.9413
SRR768131	whole fruit	no	87 days post anthesis	37.7034
SRR7343308	immature fruit flesh	no	immature	65.4341
SRR7343309	immature fruit flesh	no	immature	56.4734
SRR6320494	ripe fruit flesh	no	mature	30.9776
SRR5405143	ripe fruit peel	no	mature	56.4399
SRR6320572	ripe fruit peel	no	mature	56.6198
SRR7403504	fruit	uninfected	mature	50.2235
SRR7403506	fruit	uninfected	mature	52.9283
SRR7403507	fruit	uninfected	mature	51.4173
SRR7403500	fruit	infected with penicillium expansum	mature	112.095
SRR7403501	fruit	infected with penicillium expansum	mature	105.125
SRR7403508	fruit	infected with penicillium expansum	mature	112.362
SRR7403502	fruit	infected with penicillium expansum	mature	117.946
SRR7403503	fruit	infected with penicillium expansum	mature	120.577
SRR7403505	fruit	infected with penicillium expansum	mature	118.33
SRR1613973	Central seeds	no	20DAPF	109.195
SRR1613974	Central seeds	no	20DAPF	96.2823
SRR1613975	Central seeds	no	20DAPF	111.09
SRR1613976	Lateral seeds	no	20DAPF	88.9997
SRR1613977	Lateral seeds	no	20DAPF	101.264
SRR1613978	Lateral seeds	no	20DAPF	97.8992
SRR3744786	stem	no	mature	67.9635
SRR3744787	stem	no	mature	65.9896
SRR3744772	stem	no	mature	65.5542
SRX765691	seedling shoot apex	no	4-6 week old seedling	106.165
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	106.18
SRR1089478	leaf	Virus-free	plantlets	54.2164
SRR1089477	leaf	ASGV-infected	plantlets	52.4627
SRR767660	leaf	uninfected	fully developed	74.9625
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	97.9153
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	66.4452
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	91.4692
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	45.0894
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	60.2126
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	72.866
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	60.3645
SRR6308182	young leaf	no	immature leaves	113.243
SRR3744769	leaf	no	mature	47.2808
SRR3744770	leaf	no	mature	48.1607
SRR3744771	leaf	no	mature	49.3792
SRR5405145	leaf	no	mature	42.4786
SRR6320561	leaf	no	mature	43.1427