Gene detail

Detail information of MD09G1196200 Annotation

Gene ID	Annotation
MD09G1196200	Amino acid dehydrogenase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1196200	mRNA	Chr09	17869906	17877178	+

Sequences

CDS:

MD09G1196200

GTTACTGTCGTACCATACAACCTCTCGTCTCCTCTTCTCACTCAAGAATCAGATCGAACGAGTATCAGACCCGTTGATCTCACTCTCTGCGTCCTCCTCTTCGACAATTCCCGCGACCCTTTGCAGAAAGGTTCCAGCTTTGGTGAAGAATAACTGCTCAACGACCCCACTTCGAAACTGCAACTTGAAAGCTTGAAACTTTTCGAGTTCATCCTTTTGATCCTCTGTTCTCACGGATTTTGGGTTTCGGTTAAGTCTGTCATGCTGAATGTTGCTACCAGGAGGTGGAATAAGGATGAACTCCATGATGGATGATATGAACTTGATTCAGCAGGCACAGAGGCATCACTTAGTGGTTCGGGAGCTTGGAGAAGAGATTGATTTAGAAATTGGAACTGGGGATGATGATCCTTCATTTGCTAACAACCCCCTTATTGGTGGTCCACCACGGGAACCTTCTGTTGAGGATAATGACGAGAGTAAGAATATGGTAATGGCTTCTCACCTCCCTAGTGATGATCAAGACATGTCAAAGGGACAGCCAGTAAAAAGGAAGAAAAAGGTTGTGAAAAGATGGAGAGAGGAATGGGCTGATACCTACAAATGGGCTTATGTTGATGTCAAGGAAGGGACAGCGAGGATTTTTTGCTCTGTTTGTAGAGAGTATGGTAGGAAGCATAGAAGAAACCCCTATGGAAATGAGGGTAGCCGGAATATGCAGATGAGTGCACTCGAGGAACACAACAATAGTTTGCTTCACAAAGAGGCACTTCGCCTTCAAATGGCCTCCAAGGATAAGGTCGTTGCTGACAAACCCATTTATGTTAAAGCTCTTATGTCAAAAACGGCTGGATCAATTGTTGAAGCTGCACTGAAAAGGGATCCTCATGAGGTTGAGTTCATACAATCGGTGCAAGAAGTTGTTCATGCTTTAGAAAGAGTGATTGCGAAAAATTCTCATTATGCAAGCATCATGGAGCGCTTGCTAGAACCTGAGCGCATGCTTGTTTTTCGAGTTCCATGGATGGATGATAGAGGTGAGACACATGTTAACAGGGGCTTTCGAGTACAATTTAACCAGGCCTTGGGTCCATGTAGGGGTGGTTTCCGGTTTCATCCTTCTATGAACTTGAGCATTGCCAAGTTTCTTGGATTTGAACAGACTTTAAAGAATGCCTTGTCACCGTACAAAATTGGAGGGGCAGCGGGAGGTAGTGATTTTGATCCAAAGGGAAAAAGTGATAATGAGGTTATGCGTTTTTGCCAAAGTTTTATGAATGAAATCTATCGTTATTTGGGTGTTGACAAGGACCTTCCTTCAGAGGAGATGGGTGTTGGTACTCGAGAAATGGGATATCTTTTCGGACAATATAGACGTCTAGCTGGTCACTTTCAGGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGCTCTAGTCTTCGAACTGAAGCTACCGGATATGGACTGGTTTTCTTTGCACAACTCCTACTTGCAGACCTCAATAAAGATTTCAAAGGATTAAGGTGTGTTGTAAGTGGTTCTGGAAAGATTGCATTGCATGTCCTGGAGAAGCTTATCGCATATGGCGCGATTCCCATTACAGTTTCAGACTCGAAGGGTTATTTGGTGGATGATGAAGGATTTGATTACATGAAAATATCATTTTTGAGGGAGATCAAAGCTCAACAAAGAAGTTTGAGAGACTATTCAAAGACTTATGCTCGCTCTAAGTATTATGATGAAGCAAAACCCTGGACTGAAAGGTGTGATGTTGCGTTTCCTTGTGCTACCCAAAATGAAATTGATCAGACTGATGCCATTAATCTGGTTAATTCAGGTTGTCGTATGCTAGTAGAAGGTTCAAACATGCCATGTACACCTGATGCTGTTGATATTCTGAGAAAAGCTAATGTTCTAATTGCTCCTGCAGTGGCTGCTGGTTCTGGTGGAGTGGTTGCTGGAGAATTTGAATTGAACCACGAGTGTAATTCAGTGAATTGGTCTCCCGAGGACTTTGAATCCAAATTACAGGAATCAATGAAACAGACTTACCAGAGAACCCTTAAAGCTGCAGCTGACTTTGGTTACCAGAAAGAAAGTCCTGAATCTTTGGTTCACGGAGCCATCATTTCTGCTTTTCTGACTATTGCGCAAGCCATGACGGATCAGGGATGTGTATAGAGTGGAAGAATATTGTACAATTATTCGCACGCTCCTCAAAGCTGATCGGTGTCATCAACAATGAACAATTATCGGAGGTGCGCATACTGACGTTGGCAGTAAATTGTAGATCTTTACCGGCTTGACTGTGCTGGTTTCGAGATCAATGTGGTATGACAGATATACAAGGTTCGATTGTAACATAAAAATGTGTAATGTTGTAATAGCCGTGACTCGGAAAGAGTGAGGAAACGTTATAATAGGAAGAGTGCAAGTGAAAATTGTGTAGTAGGTGAGTAGGGTTAGGGTTAGGATAGGAAGCACTTGTGAGTTGACTCAGTTGAAATTTCATAAACTACTTGTTACTTGTGGAATATTTGGATGCTGAACGGACTTTGGAAATAAAATTTATTAATTTGCTATTTTCACGTC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G51720.1	1	Amino acid dehydrogenase family protein
Prunus persica	Prupe.3G052600.2.p	1	Amino acid dehydrogenase family protein
Prunus persica	Prupe.3G052600.1.p	0.864	Amino acid dehydrogenase family protein
Pyrus communis	PCP013313.1	1	-
Pyrus x bretschneideri	Pbr008850.1	1	-
Rosa multiflora	Rmu_sc0007525.1_g000005.1	1	-
Rubus occidentalis	Ro06_G23611	1	-
Fragaria vesca	mrna23112.1	1	Amino acid dehydrogenase family protein
Vitis vinifera	GSVIVT01016891001	1	Amino acid dehydrogenase family protein
Populus trichocarpa	Potri.001G199600.1	1	Amino acid dehydrogenase family protein
Nicotiana benthamiana	Niben101Scf02668g02001.1	1	Glutamate dehydrogenase
Oryza sativa	LOC_Os01g37760.1	1	"glutamate dehydrogenase protein, putative, expressed"
Zea mays	GRMZM2G015289_P01	1	Amino acid dehydrogenase family protein

Gene Ontology

GO term	Description	Category
GO:0006520	cellular amino acid metabolic process	biological_process
GO:0055114	oxidation-reduction process	biological_process
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K00262	glutamate dehydrogenase (NADP+)	EC:1.4.1.4

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02812.14	ELFV_dehydrog_N	242	370	2.70E-45
PF00208.17	ELFV_dehydrog	388	635	1.40E-64

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.01006
SRR5252888	dormant buds	no	dormant buds(0 month)	15.6313
SRR5252889	dormant buds	no	dormant buds(0 month)	16.4553
SRR5252886	dormant buds	no	dormant buds(1 months)	15.0499
SRR5252887	dormant buds	no	dormant buds(1 months)	13.3571
SRR5252884	dormant buds	no	dormant buds(2 months)	22.4682
SRR5252882	dormant buds	no	dormant buds(3 months)	19.3822
SRR5252883	dormant buds	no	dormant buds(3 months)	14.2141
SRR5252880	dormant buds	no	dormant buds(4 months)	21.1508
SRR5252881	dormant buds	no	dormant buds(4 months)	22.845
SRR5252878	bud break	no	bud break	13.6668
SRR5252879	bud break	no	bud break	10.2388
SRR3744766	flower	no	mature	14.4581
SRR3744767	flower	no	mature	15.7177
SRR3744768	flower	no	mature	14.9283
SRR6308190	stigmas	no	open flowers	8.3664
SRR6308181	styles	no	open flowers	8.31188
SRR6308188	filaments	no	open flowers	7.47461
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.7275
SRR6308192	pollen	no	open flowers	10.5527
SRR6308191	petals	no	open flowers	7.58192
SRR6308194	sepals	no	open flowers	8.32292
SRR6308193	receptacles	no	open flowers	7.55391
SRR6308189	ovaries	no	open flowers	7.07225
SRR3384922	fruit	no	1 week after full bloom	4.83417
SRR3384921	fruit	no	2 week after full bloom	5.47054
SRR3384920	fruit	no	3 week after full bloom	4.99642
SRR3384919	fruit	no	4 week after full bloom	5.1964
SRR3384923	fruit	no	5 week after full bloom	4.49487
SRR3384918	fruit	no	6 week after full bloom	5.73526
SRR3384917	fruit	no	8 week after full bloom	5.70323
SRR3384916	fruit	no	10 week after full bloom	5.6802
SRR3384915	fruit	no	12 week after full bloom	5.97401
SRR3384914	fruit	no	14 week after full bloom	6.23478
SRR3384913	fruit	no	16 week after full bloom	6.26796
SRR3384912	fruit	no	18 week after full bloom	6.40424
SRR3384911	fruit	no	19 week after full bloom	5.54153
SRR3384910	fruit	no	20 week after full bloom	6.90036
SRR768128	whole fruit	no	25 days post anthesis	7.00207
SRR768129	whole fruit	no	35 days post anthesis	4.23951
SRR768130	whole fruit	no	60 days post anthesis	4.3902
SRR768131	whole fruit	no	87 days post anthesis	8.23512
SRR7343308	immature fruit flesh	no	immature	11.49
SRR7343309	immature fruit flesh	no	immature	10.3509
SRR6320494	ripe fruit flesh	no	mature	10.5049
SRR5405143	ripe fruit peel	no	mature	12.4877
SRR6320572	ripe fruit peel	no	mature	6.51706
SRR7403504	fruit	uninfected	mature	9.75538
SRR7403506	fruit	uninfected	mature	8.68286
SRR7403507	fruit	uninfected	mature	9.19312
SRR7403500	fruit	infected with penicillium expansum	mature	4.01428
SRR7403501	fruit	infected with penicillium expansum	mature	3.81522
SRR7403508	fruit	infected with penicillium expansum	mature	4.53568
SRR7403502	fruit	infected with penicillium expansum	mature	3.43213
SRR7403503	fruit	infected with penicillium expansum	mature	3.25007
SRR7403505	fruit	infected with penicillium expansum	mature	2.92142
SRR1613973	Central seeds	no	20DAPF	4.85772
SRR1613974	Central seeds	no	20DAPF	5.88075
SRR1613975	Central seeds	no	20DAPF	4.40831
SRR1613976	Lateral seeds	no	20DAPF	4.75681
SRR1613977	Lateral seeds	no	20DAPF	4.62112
SRR1613978	Lateral seeds	no	20DAPF	5.36323
SRR3744786	stem	no	mature	24.3367
SRR3744787	stem	no	mature	24.8305
SRR3744772	stem	no	mature	25.2319
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.49663
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.92347
SRR1089478	leaf	Virus-free	plantlets	2.54194
SRR1089477	leaf	ASGV-infected	plantlets	2.39428
SRR767660	leaf	uninfected	fully developed	2.94804
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.7894
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.793285
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.60166
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.26242
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.89703
SRR6308182	young leaf	no	immature leaves	6.42262
SRR3744769	leaf	no	mature	18.6375
SRR3744770	leaf	no	mature	19.3248
SRR3744771	leaf	no	mature	19.4019
SRR5405145	leaf	no	mature	7.42129
SRR6320561	leaf	no	mature	5.72467