Gene detail

Detail information of MD09G1205600 Annotation

Gene ID	Annotation
MD09G1205600	GATA transcription factor 9

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0002	extracellular region

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1205600	mRNA	Chr09	19625997	19627631	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2C2-GATA

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus x bretschneideri	Pbr019135.1	1	-
Nicotiana benthamiana	Niben101Ctg14233g00001.1	1	GATA transcription factor 12

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0008270	zinc ion binding	molecular_function
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.23	GATA	222	256	4.50E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.94433
SRR5252888	dormant buds	no	dormant buds(0 month)	0.2046
SRR5252889	dormant buds	no	dormant buds(0 month)	0.237018
SRR5252886	dormant buds	no	dormant buds(1 months)	0.519806
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0920753
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.737388
SRR5252883	dormant buds	no	dormant buds(3 months)	0.321404
SRR5252880	dormant buds	no	dormant buds(4 months)	0.883102
SRR5252881	dormant buds	no	dormant buds(4 months)	0.735155
SRR5252878	bud break	no	bud break	0.586397
SRR5252879	bud break	no	bud break	2.601
SRR3744766	flower	no	mature	5.43515
SRR3744767	flower	no	mature	4.92625
SRR3744768	flower	no	mature	4.69431
SRR6308190	stigmas	no	open flowers	0.815142
SRR6308181	styles	no	open flowers	0.200101
SRR6308188	filaments	no	open flowers	18.6634
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.87551
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.92724
SRR6308194	sepals	no	open flowers	0.498141
SRR6308193	receptacles	no	open flowers	0.695161
SRR6308189	ovaries	no	open flowers	0.564732
SRR3384922	fruit	no	1 week after full bloom	0.82845
SRR3384921	fruit	no	2 week after full bloom	0.224186
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.207759
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.165965
SRR768129	whole fruit	no	35 days post anthesis	0.0911273
SRR768130	whole fruit	no	60 days post anthesis	0.152784
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0382954
SRR7403506	fruit	uninfected	mature	0.0404535
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.33612
SRR1613974	Central seeds	no	20DAPF	1.51108
SRR1613975	Central seeds	no	20DAPF	1.41882
SRR1613976	Lateral seeds	no	20DAPF	0.998302
SRR1613977	Lateral seeds	no	20DAPF	1.1701
SRR1613978	Lateral seeds	no	20DAPF	1.2181
SRR3744786	stem	no	mature	0.19174
SRR3744787	stem	no	mature	0.12651
SRR3744772	stem	no	mature	0.283896
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.23795
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.59033
SRR1089478	leaf	Virus-free	plantlets	2.78034
SRR1089477	leaf	ASGV-infected	plantlets	1.64319
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.54902
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.174385
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	3.66906
SRR3744769	leaf	no	mature	0.195734
SRR3744770	leaf	no	mature	0.585177
SRR3744771	leaf	no	mature	0.339319
SRR5405145	leaf	no	mature	0.944141
SRR6320561	leaf	no	mature	0