Gene detail

Detail information of MD09G1219000 Annotation

Gene ID	Annotation
MD09G1219000	nucleic acid binding

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1219000	mRNA	Chr09	22335074	22352820	+

Sequences

CDS:

MD09G1219000

GCATTACCCTATACTTTTCCTTCCGTACTGGTCATAAACCTCGCCACCTCCACCTCCACCTCCTCTCTCTCTCTCTCATCCCCTCTCTATCTCTCCCTCAAACTTTCTCTTTCCACTGAAAGTACTTTTCCGAAGCCCTAAACTCCAAAACGTGGCGTTTCGCTCTTCGGTTCTTTGATCGTCGACATTTGAGCTCCCTTTTGCATCGTCAAGAGACAAATATGGAACGAAATCTTCAGTTTAAGTGGGGTGAGAAAGCTGGAGATCGGAATAACAGAGGTTCCCAGTTCTATTTGTCGTTCACGATGGAAGGCGTTGAGTACTTGCTTTATGACAGTGTATATCTTTATCATGCTGGTTCTCTTGAGACCTATATTGGTAAGCTGGTGTCAATATTTGAAACAGAGACCCATGAGAAGAAGGTAAGGGTCCTGTGGTTTTTCCGTCCTGCTGAGATATGCAACTTCCTTGGTGATTACGAACCACACTGGAATGAGCTATTTTTAGGTTCCGGTGAGGGTAAAGGCCTCTCCAATATCAATCCTCTGGAAGCAATTGCTGGAAAATGCAATGTTGTCTGCACATCAAAGGACGACAGGAATCGTCAGCCATCTAAAGAAGAGTTGAGAACGGCTAATTACTTCTTCTGTCGTACATTTGATGTTGGAAAGTGTGAAATATTGGAGATTTTTCCCGATGAAATAAGGGGACTTACAGTGGAGAGATATTTTAACAAGAGAAACAATGAAAAGCTCCTCAGGATTCCCAAGTTCCAGACAAATTTGAAAGATCCAGCTGGACAGTCAATGGTGTCTTCCAAGTTAGGTTCGGCCAAGTTGATGCCCTCTCCGGTTAAAATTGACAAGTCTAGCAGCAGAATAAACCCTGTAGTGAGAGAATCGGAAGTGCCAACGGTTTGTAGTGGTGCGCGGGCATATGCTTCAAATGAGACATTAAGACTTCAACCTGGATTTGATGGATTTGCAACTCAGTCTGCTAGAATATCACATAATCAAGAGAAAGAAAAACGCAAAACAATATTTTTAGATCAACCACCTCAACCACCTATGGCTGCATCAGATACCCGTCCTTCCAAGAAGATGAGAGTTCCAGTTGGTGTAGATTCAACTAAGGGGGAAAATTCTGGAAAGAAGGCAGATGTTGATAGAGCAAGGTGGTTCAAGCAACTGCCTTGGGAGGAAAGACTGCAGATAGCTCAAGATGCAGGCCAATTGGTCTTACTAGACAATCTTGAGCCGTCCTATTCATCATCAGAAGTAGAGGGTCTAGTTTGGCAAGCATTTGGAGAAAAGGTTGAGGCAAAAATGTTACAATACAGTATTCATCCTACTCCAAACTATGGCAAGGCTTTTGTCATATTCAAGTCGAGTGTTGCTGCTGAATCTGCAATAAATAAATTAAAGGAGGGATGCCTTGTTGCGGACAAGAGACCTATCATTGGTATCAGAAGAACTCTTAAAGTGCCTGACAAAGCAGCGAGATTTGTTGGACATCTGAGCATTCCCAAACTCAGGTTTCACAGTCAGCGTGAAGAAATGAGAAAGGCAGTATCAACATCACACTGTTCTCAGCCCAATACAATCGAGTATGACATGGCCATGGAATGGTGTCTTCTGCAGCAAAAGTCAGATTTATGGTGGGACGCTTTATACAAGCCCCTTCTCTGCAGGAACATGAAAAGGAGACTGGAGACGGTATTACAGTGAAAAAGCAATTGTAATTAGCTAGGCACCCTCGGAGAAAATTGCGTTTCTTTTGTGGATTACGATAGAGTCAGACAAGGATTGCCCCGTAAATTGGACAGCATACAGGGTCCTGCCAACGTAGAGGATTGTTGTAAATCGCTGACAACGTAGACATCAGGTTTGTGTAAATCTGTCATCTGATCAAATATAATTTTGCAATCTTGGGAGGAAATATTAGAATCAAGTTCATACGGTAGCACGTCTTAATTATTCCAAGGATAGTTTTAGGTCAGCTTGTGATATGTGCATCTTTTGTAACAACTCTTGTTCACTACAATTTGAGCGTTATGAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G077800.5.p	1	bromo-adjacent homology (BAH) domain-containing protein
Prunus persica	Prupe.3G077800.3.p	1	bromo-adjacent homology (BAH) domain-containing protein
Prunus persica	Prupe.3G077800.4.p	1	bromo-adjacent homology (BAH) domain-containing protein
Prunus persica	Prupe.3G077800.2.p	1	bromo-adjacent homology (BAH) domain-containing protein
Prunus persica	Prupe.3G077800.1.p	1	bromo-adjacent homology (BAH) domain-containing protein
Pyrus communis	PCP024600.1	1	-
Rosa multiflora	Rmu_sc0001374.1_g000069.1	1	-
Rubus occidentalis	Ro06_G16619	1	-
Rubus occidentalis	Ro06_G26561	0.66	-
Zea mays	GRMZM2G044862_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0008168	methyltransferase activity	molecular_function
GO:0006306	DNA methylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.14	BAH	38	145	2.40E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.119023
SRR5252888	dormant buds	no	dormant buds(0 month)	1.80062
SRR5252889	dormant buds	no	dormant buds(0 month)	1.62238
SRR5252886	dormant buds	no	dormant buds(1 months)	1.82986
SRR5252887	dormant buds	no	dormant buds(1 months)	1.18848
SRR5252884	dormant buds	no	dormant buds(2 months)	2.2431
SRR5252882	dormant buds	no	dormant buds(3 months)	1.73054
SRR5252883	dormant buds	no	dormant buds(3 months)	1.50858
SRR5252880	dormant buds	no	dormant buds(4 months)	2.07251
SRR5252881	dormant buds	no	dormant buds(4 months)	2.1087
SRR5252878	bud break	no	bud break	1.89226
SRR5252879	bud break	no	bud break	1.14453
SRR3744766	flower	no	mature	0.234229
SRR3744767	flower	no	mature	0.283525
SRR3744768	flower	no	mature	0.205323
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.0761675
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.23548
SRR6308189	ovaries	no	open flowers	0.143563
SRR3384922	fruit	no	1 week after full bloom	0.52651
SRR3384921	fruit	no	2 week after full bloom	0.482235
SRR3384920	fruit	no	3 week after full bloom	0.0386015
SRR3384919	fruit	no	4 week after full bloom	0.106986
SRR3384923	fruit	no	5 week after full bloom	0.101743
SRR3384918	fruit	no	6 week after full bloom	0.0377536
SRR3384917	fruit	no	8 week after full bloom	0.109013
SRR3384916	fruit	no	10 week after full bloom	0.0708085
SRR3384915	fruit	no	12 week after full bloom	0.0418899
SRR3384914	fruit	no	14 week after full bloom	0.0406272
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.292779
SRR768129	whole fruit	no	35 days post anthesis	0.267929
SRR768130	whole fruit	no	60 days post anthesis	0.449209
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.022504
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	3.32951
SRR1613974	Central seeds	no	20DAPF	3.16085
SRR1613975	Central seeds	no	20DAPF	2.69903
SRR1613976	Lateral seeds	no	20DAPF	2.56581
SRR1613977	Lateral seeds	no	20DAPF	2.92217
SRR1613978	Lateral seeds	no	20DAPF	3.49236
SRR3744786	stem	no	mature	0.0556098
SRR3744787	stem	no	mature	0.0916704
SRR3744772	stem	no	mature	0.109718
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.2556
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.07459
SRR1089478	leaf	Virus-free	plantlets	0.0779858
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.237372
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.22937
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.103075
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.939525
SRR3744769	leaf	no	mature	0.0189603
SRR3744770	leaf	no	mature	0.0597629
SRR3744771	leaf	no	mature	0.0196051
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0